Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03200 atgaGCCCTGAGGTGCAGACCATCAAAAAATTTGACGCGGGGTCTAACAGGAAGCCCGGGCCTGGGATCAACGCGAGGAAGCTGGAGGAAGGGACAGAGCCCGCGGCGCTGGAGCGGGTGGCGGTGGAGGCGAGGCAGGCCATACAGAAGGCCCGTCTGGATAAGAAGATGAGGCAGGCAGAGTTGGCGAAGCAGATCAACGAGAGGCCGCAGGTGGTGCAGGAGTACGAGAACGGCAAAGCCCAGCCCAACCAGGCTGTGCTCGCTAAGATGGAGAGAGTTCTTGGTTTCAAGCTCAGGGGCGAAATCGGAAAATGA 318 0.5912 MSPEVQTIKKFDAGSNRKPGPGINARKLEEGTEPAALERVAVEARQAIQKARLDKKMRQAELAKQINERPQVVQEYENGKAQPNQAVLAKMERVLGFKLRGEIGK 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03200 105 SUPERFAMILY lambda repressor-like DNA-binding domains 45 99 IPR010982 GO:0003677
Aip05g03200 105 Pfam Helix-turn-helix 48 99 IPR001387 -
Aip05g03200 105 Pfam Multiprotein bridging factor 1 4 40 IPR013729 -
Aip05g03200 105 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 4 104 - -
Aip05g03200 105 Gene3D - 31 105 IPR010982 GO:0003677
Aip05g03200 105 MobiDBLite consensus disorder prediction 1 26 - -
Aip05g03200 105 SMART mbf_short4 47 102 IPR001387 -
Aip05g03200 105 CDD HTH_XRE 46 96 IPR001387 -
Aip05g03200 105 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 4 104 - -
Aip05g03200 105 ProSiteProfiles Cro/C1-type HTH domain profile. 48 103 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03200 Aip-Chr5 136417830 136418293 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Aip05g03200 HTH_3 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03200 K03627 - zju:107431864 159.073