Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03194 ATGCCGACTCGATCGACGGGGACCATAACGCAAGACTGGGAGCCTGTGGTTCTGCACAAGTCCAGGCCCAAGGCCCAGGACCTTCGTAATCCCAAGGCCGTGAACCAGGCCCTGAGGTCGGGCGCCGAGGTGCAGACCATCAAGAAGTTTGACGGGGGGTCTAACAGGAAGCCCGGGCCTGGGATCAATGCGAGGAAGCTGGAGGAAGGGACGGAGCCCGCGGCGCTGGAGCGGGTGGCGGTGGAGGTGAGGCAAGCCATACAGAAGGCCCGTCTGGATAAGAAGATGAGCCAGGCAGAGCTGGCGAAGCAGATCAACGAGAGGCCGCAGGTGGTGCAGGAGTACGAGAACGGCAAAGCCCAGCCCAACCAGGCTGTGCTCGCTAAGATGGAGAGAGTTCTTGGTGTCAAGCTCAGGGGCAAAATCGGAAAATGA 435 0.6092 MPTRSTGTITQDWEPVVLHKSRPKAQDLRNPKAVNQALRSGAEVQTIKKFDGGSNRKPGPGINARKLEEGTEPAALERVAVEVRQAIQKARLDKKMSQAELAKQINERPQVVQEYENGKAQPNQAVLAKMERVLGVKLRGKIGK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03194 144 Coils Coil 87 107 - -
Aip05g03194 144 SUPERFAMILY lambda repressor-like DNA-binding domains 82 138 IPR010982 GO:0003677
Aip05g03194 144 SMART mbf_short4 86 141 IPR001387 -
Aip05g03194 144 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 143 - -
Aip05g03194 144 Pfam Helix-turn-helix 87 138 IPR001387 -
Aip05g03194 144 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Aip05g03194 144 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 143 - -
Aip05g03194 144 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Aip05g03194 144 CDD HTH_XRE 85 138 IPR001387 -
Aip05g03194 144 Gene3D - 70 144 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03194 Aip-Chr5 136324397 136324831 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Aip05g03194 MBF1 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03194 K03627 - zju:107431864 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03194 05 136324397 136324831 Aip05g03194 05 136324397 136324831 ECH