Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03182 ATGGCGAGTAGGCTGAAGGAAGATGAGAAGAACGAGCGCGTAATTCGCGGTCTTCTTAAGCTTGAACCAAATCGAAGATGCATTAACTGCAACAGCTTGGGACCACAATATGTCTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGCGAATTCACCCATAGGGTTAAATCAATTTCAATGGCTAAATTTACTTCACAAGAAGTAAATGCTCTTCAAGGAGGAGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACAACGTAATTCTTTTCCTGATAGCAGTAATGTTGATCGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTTACTGTAGAGAGGGCTAACGACAAACCACCAAGAGGAAAGGGTGACAATGATATCTATGAAAACAGGAGAAATGACATGTATCAGGGAGGGTCTAGAAGCCCTCCATACGAGGACACATATGAACGGCGTTATAGTGACAGGTCTAGTTCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGACTATGGGAGGAGTCCTGGTCGTCCTCCAATAGTCAATGATTGGCGTCGTGAAGATCGTAGAGTATCTGATGGGGATTATAAGGTAGAAAATCAATCTCCTGATCGAGCCAGAGATGTTGGTTCTTCCAGTCCACCTGTGGTCCGACCTGTTAGAGAGATATTGGGGGAAAACGTAGTACCTCTTCGGATAAGTGAACCCCCCAAACCAAACAGTGGTAAAGCTGCAGATGGCTCTGTGTTGACACAGCGAACCACATCTTCCAGTAGCTTGGCGTCCAGCAATGGGAATCCAGTGGATGTTAAGCCTGAGATTACAAAGAGCCTTATTGATTTCGATGCTGATCCTGAACCACCTGTTGCTCCGGCAATTCCTCCAGCCCAACAAACTAATGTGTCTCAACCTGTTGTGCAGCCAGAAAAATCCAGTGCTGATAATTGGGCCTCTTTTGATGTTGCTTCTCGAGCTACAGCAAATTCAACTCCAAGCCCTGTGAATGTAAATCCACTTGAATCTGTGTTGTCGCAATTGTCAGTGCCAGCTTCTTTACCTGCACATCTTTCTGGAGTCCAAGCTGGCCCAACTGTTGCAACAGCCATTCCTGCGGGCAATGCGACAACACCTGTAAGTGCCGGCGGTTTCTCAGCTTTTCCACCAAGTGGTTCTTCAGGACCATCTCCTGGACTGGCAACAGCACCGCCTCCTAGTAATGCAGGACAGTGGACTGGTCTGCAGCATCAGCAACCATTGTTTCAAGCTAATGCTACCCATTCCACACAACAATATAAACCACATGTGGGTGGAGCTGTAAACAATCAGCCATGGAATATATCCTCTGTGCCGACAGTTCAAGGGCATCAAAATACACCAATGCCACATGCATACCATGATGCTATAAACCCTGCCAATACAATCAGTGTTGTTTCACAACCTTCCACTGAAGTAAAATCAGGTGGAAGAAAAGAACTTCCTGAGGATCTATTCACTGTGAAATACCCATCCTATCCTGCGCCGGTTCCAGGTTGGCAAATGGGTCTTCCCCATGGCATGGGTCTTCCCCGTGGCATGGGTGTCTCAGTGCAATATAATAATGTGGTGCCCATGCCAAGTTTTCCGCAGCAATCAAAATCTGTCAATCCATTTGATGCCAGCGGTGAATCTCCCCAAGTTCAAGCACCAACTTTTCCTTCCATGTCATCTTTGCATGGTGCTCTGCCTAGTATGCCACCTTCAGGAGCAATTCATCCTGCAAGCATGGGTAATCCATCACACGCCTGGATCCCGCCCCCGTCATCATCATATGTATCTGTCCTGCCTGGACAAGCACAAACTCTTCCATCAGCTATGGGAGCAAGGAATTACATGGTACAACAAATGCCACCACCTAACTTGCCAATGCCAAGGCCAGAAGCTAGTAGTTTCGGAACTGGAGGAGCTGTTTTCGGCTTGTCAAATCCAGATCAGCAGCTAACTAATTCATTCTCCACCACTCCTGCCTCTAATCCCTTCCCTGCAGGGGGGAACCCATTCGGCTGA 2097 0.4659 MASRLKEDEKNERVIRGLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVNALQGGGNQRAKEIYFKEWDAQRNSFPDSSNVDRLRDFIKHVYVDRRFTVERANDKPPRGKGDNDIYENRRNDMYQGGSRSPPYEDTYERRYSDRSSSGGRSPGYDQESRQYGDYGRSPGRPPIVNDWRREDRRVSDGDYKVENQSPDRARDVGSSSPPVVRPVREILGENVVPLRISEPPKPNSGKAADGSVLTQRTTSSSSLASSNGNPVDVKPEITKSLIDFDADPEPPVAPAIPPAQQTNVSQPVVQPEKSSADNWASFDVASRATANSTPSPVNVNPLESVLSQLSVPASLPAHLSGVQAGPTVATAIPAGNATTPVSAGGFSAFPPSGSSGPSPGLATAPPPSNAGQWTGLQHQQPLFQANATHSTQQYKPHVGGAVNNQPWNISSVPTVQGHQNTPMPHAYHDAINPANTISVVSQPSTEVKSGGRKELPEDLFTVKYPSYPAPVPGWQMGLPHGMGLPRGMGVSVQYNNVVPMPSFPQQSKSVNPFDASGESPQVQAPTFPSMSSLHGALPSMPPSGAIHPASMGNPSHAWIPPPSSSYVSVLPGQAQTLPSAMGARNYMVQQMPPPNLPMPRPEASSFGTGGAVFGLSNPDQQLTNSFSTTPASNPFPAGGNPFG 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03182 698 CDD ArfGap_AGFG 12 124 - -
Aip05g03182 698 MobiDBLite consensus disorder prediction 673 690 - -
Aip05g03182 698 MobiDBLite consensus disorder prediction 198 222 - -
Aip05g03182 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Aip05g03182 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Aip05g03182 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Aip05g03182 698 MobiDBLite consensus disorder prediction 313 331 - -
Aip05g03182 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Aip05g03182 698 SMART arf_gap_3 12 131 IPR001164 GO:0005096
Aip05g03182 698 PANTHER ARF GTPASE ACTIVATOR 1 698 - -
Aip05g03182 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Aip05g03182 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 131 IPR001164 GO:0005096
Aip05g03182 698 MobiDBLite consensus disorder prediction 402 425 - -
Aip05g03182 698 MobiDBLite consensus disorder prediction 127 331 - -
Aip05g03182 698 MobiDBLite consensus disorder prediction 673 698 - -
Aip05g03182 698 MobiDBLite consensus disorder prediction 127 144 - -
Aip05g03182 698 MobiDBLite consensus disorder prediction 263 288 - -
Aip05g03182 698 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Aip05g03182 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03182 Aip-Chr5 136039768 136046957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03182 12 122 C2H2 Transcription Factor Family AT4G21160 29.839 1.26e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03182 - - gmx:102669541 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03182 05 136039768 136046957 Aip08g02981 08 118467521 118472887 ECH
Aip05g03182 05 136039768 136046957 Aip05g03182 05 136039768 136046957 ECH