Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03177 ATGAAAACAAGTACAGTGTATAGAGCCCTTGATTTCCCCATTCACCATACTTACAGGGCTCTGGTGTTCAAGGCCAGTCATCCAGTGTGCAAAGACAAAAAGAACAGTTCTACAAAGATCAGGATGACAGAAACAAAGTCAACTAGCAAGATTTCCAAGAAACAGGATTCGAAAAAATATTCTGCTCCCAGCAATCAGCCTTCAAGGAAACAACATCGAAAGGGTGAAAACCCTACTCGATTCATTCCAACCTCCGACCTGCCTTCTGATTTTGGACATTCTGACTCGTGGATCTGTAAGAATTCGGCTTGTAGAGCAGTTCTGTCTAAAGATGATACATTTTGTAGAAGATGTTCTTGCTGTATTTGCCACCTTTTCGATGATAACAAGGACCCTAGTCTTTGGTTGGTTTGCACATCCGACTCAGCCCAAGGGGACTCCTGTGGTATGTCTTGCCACATCGAGTGTGCTCTTCAGCATGAAAAAGTGGGAGTAGTTGATCATGGCCAACTGATGCAACTAGATGGCAGTTATTGTTGTGCATCCTGCGGCAAAGTTACCGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCTCGGCGTTTAGATGTGCTGTGTTACCGGATATATTTGAGCTTCAGGCTTCTGAATGGAAGTTTGAGATTTAAACAACTTCATGAAATTGTACAAGAGGCGAAGGCTAAATTAGAAACGGAAGTTGGTCCAGTTAATGGGGTTTCTTCCAAGATGGCACGCGGCATTGTCAGCAGACTCCCTATTGCCGGTGATGTACAGAAACTCTGCTCTCTTGCTATTGGGAAAGCCGATGAATGGTTGGCCACTGTTCCCAGTTCAAATCCAGAATCCGGAGAGGGCTCCCTTCCCGCGGCCTGCAAGTTTGTTTTCGAAGAGGTAACAGCTTCATCAGTCAAAATAATTTTGATTGGAATATCAAATGCGTCTTCCGAGGAAATTAAGGGTTACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACAAAAGATCCTGTTTGTGTCTTTCCGAAAGCTCAGAGGAGGATTTTGATATCTGATCTCCAGCCATGCACAGAATATACTTTTAGGATTATATCTTATACCGACAAGGGCGATTTAGGTCATTCTGAGGCCAAGTGTTTCACCAAGAGCATAGAGATATTGGAAAAAAGTCCGTCTTCATCGGTTGCCATCGGCCGCAAGAAGGAGAGCCTTCAAACTGGAGACAATTCTTTTGGATCCAAAACGGAGCCGAGTTCTTCAATGTCTGACTCTGGATTTAAAGTTCGAGACCTTGGAAAACTTTTGCATCTTGCCTGGGCTCAAGAACAAGAACTTACACCTCCTTTCGAGTCTTCCAGGGACGAAGATAATGGTTGCACTTTGCAGCAGGCAGTTGAGCCAGACGACGATGCAGCCTCTCATGATCTCGAAAAAAACTGTTTGGCAGGGTCGGATGGTAGTGGTGATTCCCAAATCTGGACACAAGGGCCGACCGGAGAAGTCCCGGCTGTTGACTCTCGCGTAGATGCATGCAAGAAAAGGTTAGCAAGCTCGAACGAAGAGGCGCATGATTGTGACAGCACTCTGATGAATGGATCTCCTTTACACATACCGGATGGTTCGTTCTCATTGGACGAGAACTTCGAATATTGTGTGAAAGTGATTCGTTGGCTAGAATGCCAGGGTCATATTAAACAGGAGTTTCGGTTGAAGTTGCTGACATGGTTCAGTTTGAGGTCGACGGAGCAAGAACGTAGGGTGGGTGTGGATTTGCTTCCTTCAAGGCTCTTACCATTTTACAGTGACAAGATCACCTTGTACAGAGGCAGTAACACATTTTTCCTTGGAGGGATGATCCTTGGAAGTGAAGATTTAAGGATGTTAGGTCTTAGGAGGCATTTTGCTATTTGCTCAATTTATTGCAATTATTTTTAA 1968 0.4446 MKTSTVYRALDFPIHHTYRALVFKASHPVCKDKKNSSTKIRMTETKSTSKISKKQDSKKYSAPSNQPSRKQHRKGENPTRFIPTSDLPSDFGHSDSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTSDSAQGDSCGMSCHIECALQHEKVGVVDHGQLMQLDGSYCCASCGKVTGILGCWKKQLNIAKDARRLDVLCYRIYLSFRLLNGSLRFKQLHEIVQEAKAKLETEVGPVNGVSSKMARGIVSRLPIAGDVQKLCSLAIGKADEWLATVPSSNPESGEGSLPAACKFVFEEVTASSVKIILIGISNASSEEIKGYKLWYYKSREESHTKDPVCVFPKAQRRILISDLQPCTEYTFRIISYTDKGDLGHSEAKCFTKSIEILEKSPSSSVAIGRKKESLQTGDNSFGSKTEPSSSMSDSGFKVRDLGKLLHLAWAQEQELTPPFESSRDEDNGCTLQQAVEPDDDAASHDLEKNCLAGSDGSGDSQIWTQGPTGEVPAVDSRVDACKKRLASSNEEAHDCDSTLMNGSPLHIPDGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVGVDLLPSRLLPFYSDKITLYRGSNTFFLGGMILGSEDLRMLGLRRHFAICSIYCNYF 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03177 655 CDD PHD_VIN3_plant 119 183 - -
Aip05g03177 655 SUPERFAMILY Fibronectin type III 306 387 IPR036116 GO:0005515
Aip05g03177 655 CDD FN3 303 382 IPR003961 GO:0005515
Aip05g03177 655 Pfam PHD - plant homeodomain finger protein 99 217 IPR032881 -
Aip05g03177 655 PANTHER VIN3-LIKE PROTEIN 1 30 455 - -
Aip05g03177 655 Gene3D Immunoglobulins 283 395 IPR013783 -
Aip05g03177 655 PANTHER VIN3-LIKE PROTEIN 1 454 598 - -
Aip05g03177 655 MobiDBLite consensus disorder prediction 408 436 - -
Aip05g03177 655 MobiDBLite consensus disorder prediction 32 87 - -
Aip05g03177 655 PANTHER VIN3-LIKE PROTEIN 2-RELATED 30 455 IPR044514 GO:0010048|GO:0040029
Aip05g03177 655 Pfam Fibronectin type III domain 305 384 IPR003961 GO:0005515
Aip05g03177 655 ProSiteProfiles Fibronectin type-III domain profile. 298 397 IPR003961 GO:0005515
Aip05g03177 655 PANTHER VIN3-LIKE PROTEIN 2-RELATED 454 598 IPR044514 GO:0010048|GO:0040029
Aip05g03177 655 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03177 Aip-Chr5 135904167 135913657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03177 96 622 PHD Gene Family AT3G24440 43.750 5.73e-148 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03177 - - gsj:114418583 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03177 05 135904167 135913657 Aip05g03177 05 135904167 135913657 ECH
Aip03g02318 03 36311970 36318102 Aip05g03177 05 135904167 135913657 PCT