Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03139 ATGCGTGATCCCGGAAAGCGTCCGCAAATTTGGAATTATCCTATCAATCAACAAGATGAAATCCGTAGAGCATACATAAAGTTTGGACCATATCAATTTATTATGGATGAGTACCCTCTTTCTGGTCTAGAAAATGTGACGTCCTCCGCTGTCGCTACCGCCGCAGCTCGCGTCACACGAGCTCCCTCCGTCTCCCTCATCGCGTTTGCTCCCTTCGTTGCCATCGTCGTACGAGTTCTCTCCACTGTGCTCTTGTCTTACGAGCTCCTTCTGCGTCGCTCTCGTCGCTGCTTCTTCTCTCCTCGCTGGAAGTTTGTCATCATCTCTTCTCGTCGCCGAGAAGGTTACGAACTTGTACAAATCCAGAGGAAGAAGAGGATCCTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAGACCCTTGACAAGAACCTAGATGCGCAGGAGGTCTTGTTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTAAAGAAATTCAGCAACAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGTTGTGCTTGTGCATGAACAGGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCAGTCTCATGCAATGTTGGGTGTGGGAGCCATGCTTCCTTGTTGTTCTTCTTCTTCTTCTGAGCTCAACCCTGCAATTCGGTCAGAGGTTTCATTTTCTGTTGGATCTTGCCTCCTTCCTCATCTAGACAAGCTTATTCTTCAATGGTTGACTGAGATATTTGTGCTTATCTATGGTTTTGTTGAGAGAAAGCAGTTTTCTGCTGACATCTCCTCCAAGTTGGGAAGTAGTGTCTCTATTGTTCCCTTTGTCATTGTGGTGTCTGTTTGCACCATTCTGACTATGATTACTACCATGGCTGTTGCACAGCTTTTCTTCTTTCACATCCTCCTTATTGAAAAGGGAATCAGCACTTATGAAAAGTATAGTTGTTGGATTCTTGATATACTCTTATCTCAAGTCAACATTAACATTTGGCTCATTTTGATAATGTATTGCTGTGTGATTGCATTATTGGGCTTTCTTGGTTCCACCAATGACATGGTGTTGATCTTGGAACCTGCAATTCGAAAAGTGTTACAAGAGATGGTCCCTCCTTGA 1173 0.4348 MRDPGKRPQIWNYPINQQDEIRRAYIKFGPYQFIMDEYPLSGLENVTSSAVATAAARVTRAPSVSLIAFAPFVAIVVRVLSTVLLSYELLLRRSRRCFFSPRWKFVIISSRRREGYELVQIQRKKRILKQRLKVPPALNQFTKTLDKNLDAQEVLFLDNEIAFNEAIIEEREQGIKEIQQQIGEVNEIFKDLVVLVHEQGAMIDDIGSNIEQSHAMLGVGAMLPCCSSSSSELNPAIRSEVSFSVGSCLLPHLDKLILQWLTEIFVLIYGFVERKQFSADISSKLGSSVSIVPFVIVVSVCTILTMITTMAVAQLFFFHILLIEKGISTYEKYSCWILDILLSQVNINIWLILIMYCCVIALLGFLGSTNDMVLILEPAIRKVLQEMVPP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03139 390 Gene3D - 116 177 IPR029064 -
Aip05g03139 390 ProSitePatterns Syntaxin / epimorphin family signature. 171 210 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aip05g03139 390 SMART tSNARE_6 160 221 IPR000727 -
Aip05g03139 390 PRINTS Ribosomal protein L7A family signature 111 128 IPR001921 -
Aip05g03139 390 PRINTS Ribosomal protein L7A family signature 131 150 IPR001921 -
Aip05g03139 390 SUPERFAMILY t-snare proteins 140 215 IPR010989 GO:0016020|GO:0016192
Aip05g03139 390 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 165 217 IPR000727 -
Aip05g03139 390 Gene3D - 178 221 - -
Aip05g03139 390 PANTHER SYNTAXIN OF PLANTS 23-RELATED 150 216 - -
Aip05g03139 390 CDD SNARE_Qa 168 215 - -
Aip05g03139 390 PANTHER SYNTAXIN 150 216 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03139 Aip-Chr5 135078368 135084148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03139 152 250 SNARE and Associated Proteins AT5G46860 58.586 3.64e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03139 K20027 - aip:110262505 129.798