Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03134 ATGACATGGGTCTTGGAGGTTTCACATTCAGTTCACATTTCCTTTGAGAAGGTTCAGTTTTTTCCTATTTTATCTTCAAATTCTGTGACTCACTGTGAGACGGGTCTTGGGTTTGAAATTTTGAATGATTCTGGTCTTGAAGGAATGAAATGCAAGAGGGGAAAAGAAGGAAATTTGAACATTATGAGGAGAATTAGAATAATTTATAGTGACCCATATGCAACAGATTGTTCAAGCGAAGAAGATGACAATTTTTTGAGCAATGACTATGAACAACATGGTCCTAAGAGATTCATCAGAGAAATCTTGGTTCCATGCATGCCAACCAAATCGTATAAAGTGGATGATGATGATTCTTTACAACAAGGTATCAGCATTGACAAAATCAAACCATGTCTTAACCTTTTGCGAAACCATAGAAGCCGGAGATCATCCAGCAAGTACAGAGGTGTTCAAAGAAGGAAATGGGGGAAGTATGTGGCAGAAATCCGAGACCCCATCCGAGGCGTGCGAGTGTGGCTTGGTACTTTCAATACGGAGGAAGAAGCTGCCATGGCTTATGAGAAGAAGAGAATTGAATTTGTGAACTCATTGCTTGCTTTGAGGAGAATGATTGGTGTATTGGACTTAGAAGATGGCAATCAAGTGTTGTCTCATCCATCCCCAGCATCCGTGCTTGATGTCGCGGTGACAAGAGCATCATCTGATAATGATAGCAATGGTCCAGCTGTTGAAGGAAAGGACAATGTGGAAACAAGTGCTCTTGAAGGTGTAATGGAACCGGTTCATGTGGAAGATCATCATTCATTTCAGCATTTGCTTGAGGAGTCAACTGTGCAATCACCGGTTGGGTATGAAGTTGATAGTTTCTTGGTCAATGACAATGGTGGCTGTGCTATGTGGGATGTGAAAGATGGTGAAGGTAGCAGCACTCTTCCACATATTGAAACTGCTTTTGATGATTCAGAGTTGACTTGGTTTGATGAAACTCTGAATTTGTAA 1002 0.4102 MTWVLEVSHSVHISFEKVQFFPILSSNSVTHCETGLGFEILNDSGLEGMKCKRGKEGNLNIMRRIRIIYSDPYATDCSSEEDDNFLSNDYEQHGPKRFIREILVPCMPTKSYKVDDDDSLQQGISIDKIKPCLNLLRNHRSRRSSSKYRGVQRRKWGKYVAEIRDPIRGVRVWLGTFNTEEEAAMAYEKKRIEFVNSLLALRRMIGVLDLEDGNQVLSHPSPASVLDVAVTRASSDNDSNGPAVEGKDNVETSALEGVMEPVHVEDHHSFQHLLEESTVQSPVGYEVDSFLVNDNGGCAMWDVKDGEGSSTLPHIETAFDDSELTWFDETLNL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03134 333 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
Aip05g03134 333 PANTHER - 50 332 - -
Aip05g03134 333 SMART rav1_2 147 201 IPR001471 GO:0003700|GO:0006355
Aip05g03134 333 SUPERFAMILY DNA-binding domain 146 196 IPR016177 GO:0003677
Aip05g03134 333 Gene3D AP2/ERF domain 146 198 IPR036955 GO:0003700|GO:0006355
Aip05g03134 333 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 50 332 - -
Aip05g03134 333 ProSiteProfiles AP2/ERF domain profile. 147 211 IPR001471 GO:0003700|GO:0006355
Aip05g03134 333 CDD AP2 147 194 IPR001471 GO:0003700|GO:0006355
Aip05g03134 333 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Aip05g03134 333 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03134 Aip-Chr5 134939323 134940324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03134 44 194 AP2-EREBP Transcription Factor Family AT1G68550 35.714 1.03e-22 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g03134 AP2 3.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03134 - - aip:107642108 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03134 05 134939323 134940324 Aip05g03134 05 134939323 134940324 ECH