Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03131 ATGAAAGGTTCAAGTAGTGGTGCATTGGGAGCAAAAACAGCAAGAGCGTGTGATAGCTGCCTAAGAGTAAGAGCAAGGTGGTTCTGTGCGGCAGATGATGCTTTCCTCTGCCATGGCTGCGATAACTTGGTTCACTCGGCCAACCAGTTAGCCAGCCGCCATGAAAGGGTTAGGCTCCAAACTTCATCTTCCTCCGCCAAGATAATAACAACTGCATGGCATAGTGGCTTCACGCGCAAGGCAAGAACCCCGCGTCATCACAACAAGAGCACTTTCTTGATGCAGCAGCAACAAGATGCTGAGAAAGAAGAAGAAGCGGTTTTCAATAACTACCACGGTTCCGTGTTTCTAGATCCTGTTGTGCCAGATCTTGGAAGCGAAGATATTTATGAGAGTGAGGAGCAGATTCTGTGCCGCGTGCCGGTGTTTCACCCGTTTGATGATGATTCTGTGCTTTGTAGTGTGCACAATAATGAAGTAGTGGAGGATGAAATGATGAAGAAGAAAAAGAAGAAGATGAAGAAGATGAACAATGATGATGGTGAAGAAGGAGAAGGTGAAGTACCGTGCACGTTTGGATTGGAGAATTTCTCTGATCTTGCTGATGTAGAAAACTTGCTCCATATTGAGGATGATTCAACCATGATTAAGGTTAAGGATGAATTACAACAAGTTACTAATGATGATGATGATTGTAATCTGGAGTCCATTCTTGATTGGAATATTGACACATCAGATCAATCAATGATGATGGCAGTAGTAGAACATGATCAAGAAGAGGAGGAAAATAATAATAATTGTAGTAATAAAGTGGAAATAATAAAGAAAGAGAAGTTTTTGAGGCTAAATTATGAAGAGGTTATTTCTGCTTGGGCAAGTCAAGGATCTCCATGGACTACAGGAAATCCACCTAAGTTCAACTTTGATGATTGTTGGCCCCATTACATGGGTTCAAGTGGTGGCGTGGATAATAATGTTGAATGGTGTCATGGGGAGGAAGTAAGAAACATGAGATGGCATCAAATAGGGGGAGTTGATGATGGGGGGAGAGAAGCAAGAGTATCAAGGTACCGAGAAAAGAGAAGAACGCGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGCTCAATGCTGAGAAGAGACCAAGAATGAAGGGTCGTTTTGTGAAGAGGACATCTTCATCATCATCATCCTTTGTTGAAGGAGCCATTACTACTACTTAA 1227 0.423 MKGSSSGALGAKTARACDSCLRVRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTSSSSAKIITTAWHSGFTRKARTPRHHNKSTFLMQQQQDAEKEEEAVFNNYHGSVFLDPVVPDLGSEDIYESEEQILCRVPVFHPFDDDSVLCSVHNNEVVEDEMMKKKKKKMKKMNNDDGEEGEGEVPCTFGLENFSDLADVENLLHIEDDSTMIKVKDELQQVTNDDDDCNLESILDWNIDTSDQSMMMAVVEHDQEEEENNNNCSNKVEIIKKEKFLRLNYEEVISAWASQGSPWTTGNPPKFNFDDCWPHYMGSSGGVDNNVEWCHGEEVRNMRWHQIGGVDDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSSSSSSFVEGAITTT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03131 408 CDD Bbox1_BBX-like 16 59 - -
Aip05g03131 408 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 398 - -
Aip05g03131 408 Pfam B-box zinc finger 14 57 IPR000315 GO:0008270
Aip05g03131 408 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Aip05g03131 408 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Aip05g03131 408 Pfam CCT motif 350 392 IPR010402 GO:0005515
Aip05g03131 408 SMART bboxneu5 12 59 IPR000315 GO:0008270
Aip05g03131 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03131 Aip-Chr5 134893514 134895651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03131 1 392 C2C2-CO-like Transcription Factor Family AT1G25440 41.403 5.96e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip05g03131 zf-B_box 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03131 - - aip:107644315 793.882