Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03127 ATGCGATTAAGCTGCAACGGTTGTCGTGTCCTTCGCAAGGGTTGCAACCTTGAATGCCCCATTAAACCCTGCCTCCATTGGATCAAATCGCCGGAATCACAGTCCAACGCCACCCTCTTCCTCGCCAAGTTCTACGGCCGCGCTGGCCTCCTCAACCTCCTCACCGCCGGCGATCCCAAGATCCGCCCAGCTATTTTTAAATCTTTGCTATACGAAGCTTGCGGCCGGATAGTGAACCCGGTTTTCGGTTCGACCGGGTTGCTATCGACTGGGAGCTGGCACTTGTGCGAAGCAGCTGTTGAAGCCGTTCTTAGCGGCGCGCCGATTAGACAACAGGATGCTTCAGATGGCGGTGACCAGCTGCTAAACCCGTCTGATATTCGCCACGTGGTGAAGAGGGGGAAATCTTGCAGCTCCGATAATGTCCTTAAGCCCCGGAAGAGCCAGTTCAAGAGGCGCGCTGAGAAGTCGAAGCCGGAGCCGGAGGTTAAGCTGGATCAGGGTGTAGCCGAGTTGGTGGTGGAGGCTTGCGTAGTGAATGAGTTAGATGACTCGGCGAGCCCTGACTCAGGGTCTGGGCNNNNNNNNNNNNNNNNGTGA 600 0.55 MRLSCNGCRVLRKGCNLECPIKPCLHWIKSPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVEAVLSGAPIRQQDASDGGDQLLNPSDIRHVVKRGKSCSSDNVLKPRKSQFKRRAEKSKPEPEVKLDQGVAELVVEACVVNELDDSASPDSGSGXXXXXX 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03127 199 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Aip05g03127 199 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Aip05g03127 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 182 - -
Aip05g03127 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03127 Aip-Chr5 134804410 134806040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03127 1 156 AS2 family AT3G02550 55.975 5.73e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip05g03127 LOB 9.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03127 - - ahf:112802215 372.474