Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03117 ATGCATAATAAAGGTCAACCTGCTGATATAATCACTTACAGTTCCTTGTTGGATGGGATGTTCAATATCAAGCAACTTGACAAGGCACTTATGTTATTTATTCAGATGAAAGAGAGTGGCATTGATCCAAATATATGCACGTACAGTATACTGATTGATGGCCTATGTAAAAGTGGAAGACTTATGGATGCAAAAGAGATTTTTCAAGATCTTTGCATTAAAAACCATCGTCCAAATGTGAGGACATACACTATTATGATCAATGGGCTCTGTAAAGAGGGCTTATTTGAAGAAGCATTGGCCCTGCTGTCGGAAATGGAAGACAATGGTTGCTTACCAAATGCTGTGACTTTTGAAATCGTTATTCGTGCTTTGTTCGAAAAAGGCTCCCCAACTGAAGAAAAAGATGAACACAAACCAGAAAGTGGACAGGAGACTACTTTACCTCACCACAGAGTTCATCCGAAAGGAAGTTCAAGCAGCCAGCCAGAGCACTCTAAGCCTGTTGAAGGTTTAGGAATAAACCACCTTCTTGATCCGAAGTTAGCAGCTGTACAACATACACCATCCCAGGTAATAGATGGGAAAAATATTCCAGTTGCGGCGGCTGCAGCAGCAGCTGCTGCTGTTGTTGCTACCTCTATGGTAGCTGCTGTAGCAAAGTCAAACACTGACTCGAACATTGAGCTTTCAGTAGCTGCAGCGGCCACTGCAACTGCTGCAGCTGTAGTAGCAACCACTGCAGCTGTCAGCAAACAGTATGAGCAAGGCAGTCGAAGTGACGGACACATGGATGGCACTGCTTATGAGCCGAAGGGTAGTGGTGATGGTGAGAATATTGTGGTAGGAGCAAATTCAGGTGATAGAATATCTGATAGATCTATAGTAAGCAATGACAGTATAAAATCTGATTTTATATTAGATGATGTTGCCAAATATGACATTCCGTTGGAGGAAATTACACTGGCTGAACGTATCGGACTTGGATCGTATGGGGAGGTATACCGTGGTAAATGGCGTGGAACAGAAGTTGCTGTAAAAAGATTTCTTGATCAAGATATATCTGGTGAATCACTTGAAGAATTCAAAAGTGAGAAGTTCTTGATGAAGATTGACCATTTCAAAGCTCTTTGA 1134 0.418 MHNKGQPADIITYSSLLDGMFNIKQLDKALMLFIQMKESGIDPNICTYSILIDGLCKSGRLMDAKEIFQDLCIKNHRPNVRTYTIMINGLCKEGLFEEALALLSEMEDNGCLPNAVTFEIVIRALFEKGSPTEEKDEHKPESGQETTLPHHRVHPKGSSSSQPEHSKPVEGLGINHLLDPKLAAVQHTPSQVIDGKNIPVAAAAAAAAAVVATSMVAAVAKSNTDSNIELSVAAAATATAAAVVATTAAVSKQYEQGSRSDGHMDGTAYEPKGSGDGENIVVGANSGDRISDRSIVSNDSIKSDFILDDVAKYDIPLEEITLAERIGLGSYGEVYRGKWRGTEVAVKRFLDQDISGESLEEFKSEKFLMKIDHFKAL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03117 377 MobiDBLite consensus disorder prediction 130 152 - -
Aip05g03117 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Aip05g03117 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Aip05g03117 377 PRINTS Pollen allergen Poa pI signature 204 222 - -
Aip05g03117 377 PRINTS Pollen allergen Poa pI signature 234 248 - -
Aip05g03117 377 PRINTS Pollen allergen Poa pI signature 88 107 - -
Aip05g03117 377 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 132 - -
Aip05g03117 377 ProSiteProfiles Protein kinase domain profile. 320 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g03117 377 MobiDBLite consensus disorder prediction 130 172 - -
Aip05g03117 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Aip05g03117 377 TIGRFAM PPR: pentatricopeptide repeat domain 11 45 IPR002885 -
Aip05g03117 377 TIGRFAM PPR: pentatricopeptide repeat domain 82 115 IPR002885 -
Aip05g03117 377 TIGRFAM PPR: pentatricopeptide repeat domain 46 80 IPR002885 -
Aip05g03117 377 Gene3D Phosphorylase Kinase; domain 1 313 374 - -
Aip05g03117 377 PANTHER OS10G0495100 PROTEIN 1 132 - -
Aip05g03117 377 ProSitePatterns Protein kinases ATP-binding region signature. 326 347 IPR017441 GO:0005524
Aip05g03117 377 MobiDBLite consensus disorder prediction 254 285 - -
Aip05g03117 377 Pfam PPR repeat family 78 125 IPR002885 -
Aip05g03117 377 Pfam PPR repeat family 9 57 IPR002885 -
Aip05g03117 377 Gene3D Tetratricopeptide repeat domain 74 136 IPR011990 GO:0005515
Aip05g03117 377 Gene3D Tetratricopeptide repeat domain 1 73 IPR011990 GO:0005515
Aip05g03117 377 SUPERFAMILY Protein kinase-like (PK-like) 302 371 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03117 Aip-Chr5 134498337 134500724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03117 228 370 MAP Kinase Kinase Kinase AT1G73660 65.278 9.68e-35 134