Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03097 ATGGCTCATCACCAATTCACAGAAGATTTTCAAAGCATGATCATGAAACCTTTCTTGGATATTGATCCAAGCATGGATCTCATCAACCAGTTCATAGGTTTGAACACAACAACAACAACAACAACAACACATATGAACATGTGTGACAACTTGTTTGGATCTCATCATCATCATCATCATCACCAAGATGATTTTCAAGGAAACTTGGAAGAAAGTTTCCATCAAAATCATCATCATGTCAACAACAATGCATCATCAGTAGTAGTCCCAGTAATTTCTTCTTCCCTTCTCAATTATTATCCATCAGAAAATGAAGAAGTCCATGAAGGTAAAAAGAGAAAAGCAACAACTTCAGGAAACTCAACTCCTGCAGCTTCTCATCATAGTGAAAGCAAGATTATTAAAAATAATGTAAGTAAGAGAGTGAAGAGCAATAAAACAGAAGAAGAAGAGGAGAAGAAACAAAAGGAAGTGGTTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGATAGTCACAGCATAGCTGAAAGGGTTAGAAGAGGAAAAATCAATGAAAAATTAAGGTGCCTGCAAAACATTGTTCCAGGATGTTACAAGACCATGGGCATGGCGGTTATGTTGGATGAAATCATAAACTATGTTCAATCCTTGCAACATCAAGTAGAGTTCCTTTCTTTGAAGCTCACAGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGAGAGCAAAGGCATCCGAGGCAAAAGAGTTAGGCAAGTATGGGAAAGAAGGGCATGGAGGAGTTTCTTGCTATCAACCAAATTGGCCTCTTGTTTGA 840 0.3821 MAHHQFTEDFQSMIMKPFLDIDPSMDLINQFIGLNTTTTTTTTHMNMCDNLFGSHHHHHHHQDDFQGNLEESFHQNHHHVNNNASSVVVPVISSSLLNYYPSENEEVHEGKKRKATTSGNSTPAASHHSESKIIKNNVSKRVKSNKTEEEEEKKQKEVVHVRARRGQATDSHSIAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRAKASEAKELGKYGKEGHGGVSCYQPNWPLV 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03097 279 MobiDBLite consensus disorder prediction 104 174 - -
Aip05g03097 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983
Aip05g03097 279 MobiDBLite consensus disorder prediction 133 174 - -
Aip05g03097 279 SMART finulus 173 223 IPR011598 GO:0046983
Aip05g03097 279 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 5 277 IPR024097 GO:0006355
Aip05g03097 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 233 IPR036638 GO:0046983
Aip05g03097 279 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Aip05g03097 279 MobiDBLite consensus disorder prediction 116 132 - -
Aip05g03097 279 Gene3D - 163 234 IPR036638 GO:0046983
Aip05g03097 279 PANTHER TRANSCRIPTION FACTOR BEE 1 5 277 - -
Aip05g03097 279 CDD bHLH_AtBPE_like 158 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03097 Aip-Chr5 134281982 134283913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03097 6 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 47.603 3.60e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g03097 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03097 - - adu:107490384 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03097 05 134281982 134283913 Aip05g03097 05 134281982 134283913 ECH