Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03094 ATGTCTTTTTCATCAAAGAGCAATAATAAAAACATTATTAGCTGCTCTAGTGAAGATGATAATAATAATAAGGATAATGAACTTAGAAGAGGACCTTGGACCCATGAAGAGGATGATCTTCTCAAAATGTGCATTGCCATTCATGGTGAAGGCAGATGGAATTTTCTGGCCAAATCTTCAGCAGGGTTAAAAAGAACAGGGAAGAGTTGCAGATTAAGGTGGCTTAATTATCTAAAGCCAGATGTGAAAAGAGGAAATTTAACCCCACAAGAAAAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCAAAAATTGCACAACAATTGCCTGGAAGGACAGATAATGAAATCAAGAACTTCTGGAGAACAAGAATCCAAAAACAAGTGAAGTATTTCAAGATTGACACATTATGGAGGACAAGATTTGTTGATGAATCAAAAGAATTATACCAAGAGCAAAACCAAAACCAAGCATTAATTATTCCAACAATGTCTCCTGATTGTGTCACTCAAATGCAGCAATATCCATCACTTATTGAAGAAGCAACACCAACACCAGCAAAAACTCAAATAATTCCATGTGAGAGACCTTCTTGTATGATGAATGGTGCAAGTTCAAATTGTGTGGATTACTCAGATTATGAAAACAACAACAACAATAATGGATCATCATGCATGTCCTTCACAGAGTCAACAAATATGGCAAACATGGTTCAGTTTGAGACTTTAGATAACATCACTAATGCATATGGCATGGATGCACTCAACATCGATATGGAATGCCAAGTGTCACAAAGCAATTGGCTAGACAAGGATTTTGTATGTACCATGTGGAACATGAACATGGATGAATTGTCACACTTTAGGAGTATACAAAATCAGTAA 897 0.3634 MSFSSKSNNKNIISCSSEDDNNNKDNELRRGPWTHEEDDLLKMCIAIHGEGRWNFLAKSSAGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEKLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNFWRTRIQKQVKYFKIDTLWRTRFVDESKELYQEQNQNQALIIPTMSPDCVTQMQQYPSLIEEATPTPAKTQIIPCERPSCMMNGASSNCVDYSDYENNNNNNGSSCMSFTESTNMANMVQFETLDNITNAYGMDALNIDMECQVSQSNWLDKDFVCTMWNMNMDELSHFRSIQNQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03094 298 CDD SANT 32 78 IPR001005 -
Aip05g03094 298 ProSiteProfiles Myb-like domain profile. 25 78 IPR001005 -
Aip05g03094 298 MobiDBLite consensus disorder prediction 1 19 - -
Aip05g03094 298 PANTHER MYB DOMAIN PROTEIN 116 22 284 - -
Aip05g03094 298 SMART sant 83 131 IPR001005 -
Aip05g03094 298 SMART sant 29 80 IPR001005 -
Aip05g03094 298 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Aip05g03094 298 Pfam Myb-like DNA-binding domain 30 78 IPR001005 -
Aip05g03094 298 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Aip05g03094 298 MobiDBLite consensus disorder prediction 1 31 - -
Aip05g03094 298 CDD SANT 88 127 IPR001005 -
Aip05g03094 298 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 284 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aip05g03094 298 Gene3D - 87 130 - -
Aip05g03094 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Aip05g03094 298 Gene3D - 27 84 - -
Aip05g03094 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 78 IPR017930 -
Aip05g03094 298 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03094 Aip-Chr5 134216042 134218320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03094 25 293 MYB Transcription Factor Family AT1G68320 42.517 2.35e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g03094 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03094 K09422 - gmx:778042 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03094 05 134216042 134218320 Aip05g03094 05 134216042 134218320 ECH