Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03081 ATGGCGTTTGCCACCGGTGATGGTGACCGCTCCGAGCTCCGGCCGCTCTCCGAACGGTACCATTTCATCAGATCGATGTATAGGCACCACTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTTTAGACATACGTGTGAAGAACGTAGCACATACATATTCTCTTGAACACAAGGGAGAAAGCAATCTTTTTGATCATCTATTTGAGCTTCTAAATTCTTCAACCCATAACGATGAAAGTTTCCCAAGGGAGTTAGCATCGTGCACAGGAGCTTTACACACATCAGTTAGTCAACACTTAGCTAAGGAAGAGGAGCAGGTTTTTCCACTGCTCATTGAGAAGTTCTCTCTGGAGGAACAAGCATCTTTAGTTTGGCAATTCCTTTGCAGTATTCCTGTGAATATGATGGCTGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGAAGAATCTCAGGATTTGCGGAAGTACTTAAGCAAAATAGTTCCAGAGGAGACGCTTCTTCAAAAGGTTATTTACACATGGATGGAAGGTAGAAGTAGTGCTAACACAGTTGAAAATGGTGTAGATCATTCTCAAGTTCAATGTAGTCCTAGTCCATTAACCCATCAGATTGGGAAAGTAAAATGTGCATGTGAGTCCACAGGAACGGGGAAAAGGAAATATTCTGGATGTATCATAGATGTTTCTGACACTACCGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAAAAAAGAATTAAATGAGATAGCAGTGGAGACCAGAAAGATACAATTGTCTGGAGATTTTACCAATCTGTCAGCTTTTAATGAAAGGTTGCAATTCATTGCAGAAGTTTGCATATTTCACAGTATTGCTGAGGACAGGGTTATTTTTCCAGCAGTAGACGCAGAGCTATCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGTGTTTGATTGAAAGAATTCAAGGTGAAGGAGCAACATCTAACTCCGAAGTTGAATTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATCCAGAGGCATTTCAAGAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGTATCAAAAGGCAACGTGAACTTCTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAACGTGTGCTGCCATGGTTGGTTGGATCATTGACTGAAGATGAAGCAAAGATGTTTCTGAAAAATATGCAATTAGCAGCTCCAGCGACAGACTCTGCTTTAGTCACACTCTTTTGTGGTTGGGCTTGCAAGGCTCGTAACTATGGTTTGTGTTTGTCTTCAAGTGCATTAGGTTGTTGTCGTGCTCAAACATTTGCTGACATTGAAGAGAATATTGTTCAACTCTCCTGTGGTTGTGCTTCTACATCATCTGCTCGAGATTGTTTTCTGTTAACTGGATCAGATTCCCAAAGATCAGTGAAGCGCAACATGACGGAGTTGCACAAGAATGGAGATGTCCCAGAAACTTTAGAAAATGAAAGTATCCAGAAACAATGTTGCAGTCCCCGATCTTGTTGTGTGCCAGCTTTAGGGGTTAACACTAACAATTTGGGGCTCAGTTCACTTTCTACAGCCAAGTCTTTACGCTCCTTGTCTATCGCCTCTTCTGCCCCATCCCTGAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCCCATGTGATTTAGGATCGACAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAGTCTGGGAAGCTTAATGAAGGTGATGAAACTACCATTCACCAATTTAGTGGAAGGTTTCGTCTTCTATGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCAGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCTTGTGTTCTTTCTGAGCTTTCATCGCTTCATGAAGCCATGCAGAAGTCCCACATGTCGGAGAATTTAGATGAAATTAATTTGGGATCTTCTGATGCTAAAGATAGTGATAATATCAGAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCAGTAAGAGTGACCCTGGATCAGCATATTTTTCGGGAAGAACTTGAGCTCTGGCCATTGTTTGGGAAATATTTTACTGTGGAAGAGCAAGACAAGATAGTGGGCCGAATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCTATGTTACCATGGGTAACTTCTGCACTTACTGAAGACGAACAGAACAAAATGATGGACACCTGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTAAAAGAGAGTCCAGTACCTGTTTCACCAACAGAAACATCAGAGTGTAGCACTTCTCAAAGAGGTGCTGACTATCAAGAAAGCTTGGACCTCAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTCTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTCCAGAATCTAATGACAAGTCGTTGGATTGCTGCCCAGCAGAAGTTACCTAAAGCTTTATCTGGGGACTCCTCTAATAAAGAAATAGAAGGACGCTCACCATCATTTCGGGACTCGGAGAAGCAAGTTTTGGGTTGTGAGCATTATAAGAGAAATTGTAAGGTTCGTGCAGCTTGTTGTGGCAAGTTATTTACATGCAGATTTTGCCATGACAATGTGAGCGACCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGTGTGTCTGACTATACAGCCAGTTGGGCCTGTATGCATGTCTCCTTCATGTAACGGACTTTCAATGGCCAAGTACTATTGCAATATTTGCAAGTTTTTTGATGATGAAAGGAATGTGTATCATTGCCCATATTGCAATATTTGCCGTGTTGGCCAAGGGCTAGGGATTGACTATTTTCATTGCATGAAATGCAATTGTTGCTTGGGAATAAAATCAACATCTCACAAGTGCCTGGAGAAGGGTTTAGAAATGAACTGCCCAATATGCTGTGATGACTTGTTCACATCAAGTGCGACAGTCAGGGCTCTACCATGTGGACATTACATGCATTCAGCTTGCTTTCAGGCATACACATGTAGTCACTACACATGCCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTCTATTGGCTACTGAGGAGCTTCCTGAAGAGTACAGGAACCGCTATCAGGACGTACTCTGCAATGACTGTGATAGAAAGGGCACTTCACGTTTTCACTGGTTATATCACAAATGTGGATTCTGTGGCTCCTACAATACTAGGGTGATCAAGACTGAGGCTACAAATTCTAGCTGCTCCTAG 3531 0.4132 MAFATGDGDRSELRPLSERYHFIRSMYRHHSNAEDEVIFPALDIRVKNVAHTYSLEHKGESNLFDHLFELLNSSTHNDESFPRELASCTGALHTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPEESQDLRKYLSKIVPEETLLQKVIYTWMEGRSSANTVENGVDHSQVQCSPSPLTHQIGKVKCACESTGTGKRKYSGCIIDVSDTTGTHPIDEILLWHNAIKKELNEIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDRVIFPAVDAELSFFQEHAEEESQFNDFRCLIERIQGEGATSNSEVEFYSKLCSHADHIMETIQRHFKNEEVQVLPLARKHFSIKRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFLKNMQLAAPATDSALVTLFCGWACKARNYGLCLSSSALGCCRAQTFADIEENIVQLSCGCASTSSARDCFLLTGSDSQRSVKRNMTELHKNGDVPETLENESIQKQCCSPRSCCVPALGVNTNNLGLSSLSTAKSLRSLSIASSAPSLNSSLFIWETDSSPCDLGSTERPIDTIFKFHKAIRKDLEYLDVESGKLNEGDETTIHQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYMLDHKQEEKLFEDISCVLSELSSLHEAMQKSHMSENLDEINLGSSDAKDSDNIRKYNELATKLQGMCKSVRVTLDQHIFREELELWPLFGKYFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNECLKESPVPVSPTETSECSTSQRGADYQESLDLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKALSGDSSNKEIEGRSPSFRDSEKQVLGCEHYKRNCKVRAACCGKLFTCRFCHDNVSDHSMDRKATLEMMCMVCLTIQPVGPVCMSPSCNGLSMAKYYCNICKFFDDERNVYHCPYCNICRVGQGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRNRYQDVLCNDCDRKGTSRFHWLYHKCGFCGSYNTRVIKTEATNSSCS 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03081 1176 SUPERFAMILY CHY zinc finger-like 925 988 IPR037274 GO:0008270
Aip05g03081 1176 CDD Hr-like 1 109 - -
Aip05g03081 1176 Pfam Ring finger domain 1059 1101 IPR001841 -
Aip05g03081 1176 ProSiteProfiles Zinc finger CTCHY-type profile. 996 1059 IPR017921 -
Aip05g03081 1176 PANTHER CHY ZINC FINGER PROTEIN 1 1175 - -
Aip05g03081 1176 Pfam CHY zinc finger 931 1006 IPR008913 GO:0008270
Aip05g03081 1176 Gene3D - 1130 1172 - -
Aip05g03081 1176 Gene3D nmb1532 protein domain like 581 823 - -
Aip05g03081 1176 Pfam Hemerythrin HHE cation binding domain 8 111 IPR012312 -
Aip05g03081 1176 Pfam Hemerythrin HHE cation binding domain 237 371 IPR012312 -
Aip05g03081 1176 Pfam Hemerythrin HHE cation binding domain 585 748 IPR012312 -
Aip05g03081 1176 SMART ring_2 1060 1101 IPR001841 -
Aip05g03081 1176 ProSiteProfiles Zinc finger CHY-type profile. 924 993 IPR008913 GO:0008270
Aip05g03081 1176 CDD Hr-like 587 747 - -
Aip05g03081 1176 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 1175 - -
Aip05g03081 1176 SUPERFAMILY Zinc hairpin stack 997 1053 IPR037275 -
Aip05g03081 1176 Gene3D nmb1532 protein domain like 240 387 - -
Aip05g03081 1176 Gene3D nmb1532 protein domain like 2 129 - -
Aip05g03081 1176 Pfam Zinc-ribbon 1107 1164 IPR039512 -
Aip05g03081 1176 ProSiteProfiles Zinc finger RING-type profile. 1060 1102 IPR001841 -
Aip05g03081 1176 CDD RING-H2_Pirh2 1059 1102 - -
Aip05g03081 1176 CDD Hr-like 240 369 - -
Aip05g03081 1176 SUPERFAMILY RING/U-box 1057 1113 - -
Aip05g03081 1176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1055 1104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03081 Aip-Chr5 134022955 134031945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03081 585 799 C2H2 Transcription Factor Family AT3G18290 26.512 1.14e-18 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03081 K16276 - gmx:100791354 2087.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03081 05 134022955 134031945 Aip05g03081 05 134022955 134031945 ECH
Aip03g02382 03 37913885 37921406 Aip05g03081 05 134022955 134031945 PCT