Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03032 ATGGCTGTTGTAAGAGAACAAGATATGAAATGGAGAAGAGAGAGAAACAAGTTGAGGCAGCAGCAAGTCCCTTCCATGACCCAAACCACAAGCTGCAAATCCACCATATCCTCTCTCATCCTCTCCTCTTTCTCCAATGAAACCGCCACAAACAAGAACAAGAGTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAACAAGTCTCAGTTCCTGCTGTGATTCGATCCTCTGCTGATTGGAAGAACACTAGGAAGAAGAACAAGTGCAGAAGGAGGAACACTGAAAAAAGCAGCATAACATGTCACCATAAGCATGCTTCTTCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTCGCATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAACACATAGGGAAGAGCGTCCTCCGCCTTATTTCGGAAGACGCACCATGAACACAGGCTTCTCTTTCATGGATGATGATCAAGGCATTTTCGTGGCACGCCCCGGATCGGAGTCTTTTTCTGCCGGTAGATACTATCGCCACGTTCCGCATCCCTCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGACTATTAATGGGTGGAAGATTAAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGCCATGTTAACACTGGACTTAAAGAAGATGAGATGGGACACAACATAAGGAAGATTAAGCATGTAATTTCAAATAATTATTCAAAGCATCAAATAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAAGCTGATGATGAAATTGGGAGGCTAACTTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAGAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTAGTTCGACACTGA 1032 0.4331 MAVVREQDMKWRRERNKLRQQQVPSMTQTTSCKSTISSLILSSFSNETATNKNKSTFRGLGCTAASASSQQVSVPAVIRSSADWKNTRKKNKCRRRNTEKSSITCHHKHASSSSSSFQDVWCGPGIGFASDHASASVDCVVARKNASSRRNLDAVERATHREERPPPYFGRRTMNTGFSFMDDDQGIFVARPGSESFSAGRYYRHVPHPSSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNYSKHQIDKKCSICQEEYEADDEIGRLTCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03032 343 CDD RING-H2_PA-TM-RING 295 336 - -
Aip05g03032 343 Pfam Ring finger domain 294 336 IPR001841 -
Aip05g03032 343 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Aip05g03032 343 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 343 - -
Aip05g03032 343 SMART ring_2 295 335 IPR001841 -
Aip05g03032 343 MobiDBLite consensus disorder prediction 85 106 - -
Aip05g03032 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 342 IPR013083 -
Aip05g03032 343 SUPERFAMILY RING/U-box 294 341 - -
Aip05g03032 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 343 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03032 Aip-Chr5 132874542 132880441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03032 7 250 C3H Transcription Factor Family AT1G73760 38.007 3.87e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g03032 - - ahf:112751066 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03032 05 132874542 132880441 Aip05g03032 05 132874542 132880441 ECH