Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g03008 ATGGCGAATGGGACGGATCTGGAGGAAATGGGCAGAGAACTCCAGTGCCCCATTTGTTTAAGTTTGCTGAATTCTCCGGCCAGTCTTCCATGCAGCCATGTCTTCTGCAACTTTTGTATCGTCAACTCTATGAAGTCGTCTTCTGATTGCCCTGTCTGTAAAATACCCTTCTTCCCTCGAGAGGTTCGCCTTAGTCCTCGTTTGCTCAACTTGGTTAACATTTACAAAAGAATGGAACGCTCTTCTGGTATGAACTTATTCCTCACCCAGAATCTGCACTACTATAAGTTTTCAGATGAAGAAACGCAATGTCAAGTTGATGCTGACTGTGGAGACCACGCGGAAGACCTCCGATACGTCGAGGTGTACGAGGTCACGGGCGGCCTAGGAAGTGACCGCTTGCCAATGATGAAAGCGTTAGGGTTCCGCCTCTTGTCAGGTGCCATAGGCAGTGGTTCTGAAATTTCCAGTGGTCCACTAAGGTTGTCCTTTAGTCTGGAGCAGCTGTGA 510 0.4843 MANGTDLEEMGRELQCPICLSLLNSPASLPCSHVFCNFCIVNSMKSSSDCPVCKIPFFPREVRLSPRLLNLVNIYKRMERSSGMNLFLTQNLHYYKFSDEETQCQVDADCGDHAEDLRYVEVYEVTGGLGSDRLPMMKALGFRLLSGAIGSGSEISSGPLRLSFSLEQL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g03008 169 Pfam Zinc finger, C3HC4 type (RING finger) 15 53 - -
Aip05g03008 169 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Aip05g03008 169 SUPERFAMILY RING/U-box 7 76 - -
Aip05g03008 169 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 6 111 IPR031099 GO:0006281|GO:0006974
Aip05g03008 169 SMART ring_2 16 53 IPR001841 -
Aip05g03008 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Aip05g03008 169 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 6 111 - -
Aip05g03008 169 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g03008 Aip-Chr5 132373939 132376353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g03008 14 64 C3H Transcription Factor Family AT5G54990 42.593 4.28e-07 46.2