Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02993 ATGGCAGAGCTTGATCCATCCAAGAAAGTAGCTGATAGGTATCTCAAGCGTGAGGTTCTTGGTGAAGGTACCTATGGAGTCGTTTACAAAGCCATTGATACACAGACGGGGCAGACGGTTGCGATTAAGAAGATTCGGCTTGGTAAGCAGAAAGAAGGGGTGAATTTTACAGCACTTCGAGAAATAAAATTGCTCAAAGAGCTCAAAGATCCAAATATTATTGAGTTGATTGATGCATTCCCACACAAAGGGAACTTGCATCTTGTGTTTGAGTTCATGGAGACTGACCTTGAAGCTGTGATACGGGACAGAAATATTTTTCTTTCGCCGGGGGATATAAAATCTTACCTTCAGATGACACTAAAAGGTCTTGCAGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAACCAAATAACTTGTTGATAGGGTCTAATGGACAGCTAAAACTTGCAGATTTTGGCTTAGCACGGATATTTGGAAGCCCAGATCGCAGGTTCACACATCAGGTATTTGCTCGGTGGTACAGAGCACCCGAGTTATTATTTGGTACCAAGCAGTATGGGGCAGGGGTAGATGTTTGGGCTGCAGCTTGTATTTTTGCTGAACTACTTCTTCGTCGTCCCTTCCTCCAGGGTTCAAGTGATATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACCCCATCACCTGCTCAGTGGCCTGATATGGTATATCTTCCTGACTATGTTGAATACCAACATGTTCCTGCTCCACCTTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACATATGATCCGAATGCTAGAATTTCACTATTCCTCTTCAGGTATTTCTCTTCCGCACCTCTGCCTACAGTTCCAGAGAAGCTTCCACGACCTGCCCCTAAGAAGGAATCTAAAGCTTCAGATGTCGATTCACAGGATGGTCCTACTGTGTTATCACCTCCGAGAAAGTCGAGGAGAATTATGCCGGGGCGTGATGGATTTGAAGGAAATTCTTTGCAGGAAGATAAGTTTGATGACAATGCCGGTAATTTCCGGCAAACAGTAGCTGATAATACAGGAAAGAATGGGCCAGCACCGATGTCACTAGATTTTTCTCTCTTCGGATTAAAACCTCCTAATAGACCTACAATTACAAGTGCTGACAGATCGCATTTAAAAAGAAAATTAGATTTGGAATTCGGCAACCAGAATGACTAA 1242 0.4259 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGAGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPAQWPDMVYLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPNARISLFLFRYFSSAPLPTVPEKLPRPAPKKESKASDVDSQDGPTVLSPPRKSRRIMPGRDGFEGNSLQEDKFDDNAGNFRQTVADNTGKNGPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEFGNQND 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02993 413 PANTHER CELL DIVISION PROTEIN KINASE 9 354 - -
Aip05g02993 413 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Aip05g02993 413 ProSiteProfiles Protein kinase domain profile. 14 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02993 413 SMART serkin_6 14 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02993 413 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Aip05g02993 413 SUPERFAMILY Protein kinase-like (PK-like) 10 285 IPR011009 -
Aip05g02993 413 Pfam Protein kinase domain 16 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02993 413 Gene3D Transferase(Phosphotransferase) domain 1 95 306 - -
Aip05g02993 413 MobiDBLite consensus disorder prediction 333 356 - -
Aip05g02993 413 MobiDBLite consensus disorder prediction 299 356 - -
Aip05g02993 413 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 354 - -
Aip05g02993 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Aip05g02993 413 CDD STKc_CDK7 13 304 IPR037770 GO:0005675|GO:0008353|GO:0070985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02993 Aip-Chr5 132220680 132225057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02993 4 408 Core Cell Cycle Gene Families AT1G73690 73.284 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Aip05g02993 Pkinase 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02993 K02202 - gmx:100814263 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02993 05 132220680 132225057 Aip05g02993 05 132220680 132225057 ECH
Aip03g04413 03 128497026 128500165 Aip05g02993 05 132220680 132225057 PCT