Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02990 ATGGATGAAGATCCAAAACCAGAAGTTCAAGCAGAACCTATCGATGTTGAACCAAAAGCAAAAGAGAAGGAAATTCCTCCTACACAGGATGAAGATGATGAGGCGGAGATGATGAAAAAAAGGCACTTAAATGTTGTGTTTATTGGTCATGTAGATGCTGGTAAGTCTACAACAGGAGGTCAGATATTGTTTCTAAGTGGCCAGGTTGATGAAAGAACTATCCAAAAATATGAGAAAGAAGCTAAAGACAAAAGTAGAGAAAGCTGGTATATGGCTTATATTATGGACACAAATGAGGAGGAGAGGGTAAAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGTTATGTACCTAACATGATCAGTGGTGCATCTCAGGCCGATATTGGAGTGTTGGTAATTTCAGCTCGAAAGGGAGAATTTGAAACAGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTCGCAAAAACGTTGGGGGTGGCTAAATTGCTTGTTGTTGTCAATAAAATGGATGAGCCGACTGTGGAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCCAAAATGACACCATTTCTAAAACAATCAGGATACAATGTGAAAAAAGATGTCATTTTTCTACCAATATCTGGGTTGGTCGGTACAAATATGAAGACAAGAGTGGATAAAAAGATCTGCCCATGGTGGAATGGCCCATGCTTATTTGAAGCACTTGATGCTGTTGAAGTTCCTGAGCGAGACCCCAAAGGCCCTTTTAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAATCTGGTACCGTTCGTGAGGGAGATTCCTTGTTGGTTATGCCAAATAAGGCTCAAGTAAAAGTTGTTGCTATATATATTGATGAGGATAAGGTCAAACGTGCTGGACCTGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAAGAAGACGACATATCAAGTGGGTTTGTCCTATCAAGTGTTGCAAATTCAATACCAGCTGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCGGGGTATAAGGCTGTTTTGCATATCCACTCTGTTGTTGAAGAATGTGAGATTATTGAGCTCTTACATCAAATTGATCCAAAAACAAGGAAGCCTATGAAAAAGAAGGTCCTCTTTGTGAAGAACGGGGCTAATGTTGTGTGCCGAATTCAGGTTAATAGCATGATATGCATTGAGAAGTTCTCTGATTTTCCACAGCTTGGGAGATTTACTCTTCGCAGTGAAGGGAAAACTGTTGCAGTGGGGAAGGTTACTGCCCTATCTTTGTCACTGTGTGAGCAGGACATAATTTGTGCAAAGACAAATGCTGTGGCAGCAGTGAGGCATCAAGTTTGA 1431 0.4039 MDEDPKPEVQAEPIDVEPKAKEKEIPPTQDEDDEAEMMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVEWSKERYDEIESKMTPFLKQSGYNVKKDVIFLPISGLVGTNMKTRVDKKICPWWNGPCLFEALDAVEVPERDPKGPFRMPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKAQVKVVAIYIDEDKVKRAGPGENLRIRLSGVEEDDISSGFVLSSVANSIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGANVVCRIQVNSMICIEKFSDFPQLGRFTLRSEGKTVAVGKVTALSLSLCEQDIICAKTNAVAAVRHQV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02990 476 MobiDBLite consensus disorder prediction 1 35 - -
Aip05g02990 476 Gene3D Translation factors 255 340 - -
Aip05g02990 476 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 347 451 IPR009001 -
Aip05g02990 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 261 IPR027417 -
Aip05g02990 476 Pfam Elongation factor Tu GTP binding domain 40 232 IPR000795 GO:0003924|GO:0005525
Aip05g02990 476 Pfam Elongation factor Tu domain 2 270 336 IPR004161 GO:0005525
Aip05g02990 476 CDD EF1_alpha 44 251 - -
Aip05g02990 476 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 40 255 IPR000795 GO:0003924|GO:0005525
Aip05g02990 476 PANTHER BNAA06G12300D PROTEIN 5 454 - -
Aip05g02990 476 PRINTS GTP-binding elongation factor signature 125 136 IPR000795 GO:0003924|GO:0005525
Aip05g02990 476 PRINTS GTP-binding elongation factor signature 109 119 IPR000795 GO:0003924|GO:0005525
Aip05g02990 476 PRINTS GTP-binding elongation factor signature 169 178 IPR000795 GO:0003924|GO:0005525
Aip05g02990 476 PRINTS GTP-binding elongation factor signature 44 57 IPR000795 GO:0003924|GO:0005525
Aip05g02990 476 Gene3D Translation factors 345 453 - -
Aip05g02990 476 CDD eRF3_C_III 344 452 - -
Aip05g02990 476 Gene3D - 22 251 IPR027417 -
Aip05g02990 476 SUPERFAMILY Translation proteins 249 341 IPR009000 -
Aip05g02990 476 CDD eRF3_II 257 338 - -
Aip05g02990 476 PANTHER TRANSLATION FACTOR 5 454 - -
Aip05g02990 476 Pfam Elongation factor Tu C-terminal domain 343 452 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02990 Aip-Chr5 132180899 132188438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02990 40 452 Eukaryotic Initiation Factors Gene Family AT5G60390 36.659 2.70e-90 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02990 K03267 - gmx:100793653 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02990 05 132180899 132188438 Aip05g02990 05 132180899 132188438 ECH