Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02983 ATGGCTCCCCGCGCCGACCAAGACAGTCTCTCAAGCACCGATGACGACGAAAGCGACGACGAAGGCCTCAAGGAGGACTTGGCGGCGCTCTCTAGGGCCTTCGATATGAGCGGCGCTGACTCCACCACGCCTCCCGACCCCGTCCTTCAAGTGGATTTCGACGACGACGTGCGCGGCGGTGTCTCCACAGCTCCTCCTCCCGCCGCGTCCACTGACCTCGTGGTTCGAACGGACTCCGGCGACGAGCTGCGCAACGACCCACTGTTGGCCACCGGCGATGCCGTCGTATCCTTCGACGCTGTCGACTCCGGCGGCTACGAGTCCAACGAAGATATTGAGTATCTCCAGAGATTGCAGAGTCTCTACAAGCCTCTGGCGACTCTTCCTCCTCCATCGCCTTCGCCGCCACCGGTGGACGTATTCGATGATGATGACGACGATGATGTCGAGACTGTTCGCGCCATTTTCAAACGGTTTGCCGACTACGATATGAGAGGTTTAGGTACAATGACTGAGGGAGATCAGGCCACAAGTCCAGGCCCTGAGAGAGACATTGCTAATGGTTCAACATCTTCCGTAATTGTTGAAGGTGGTGAAACATGCCCTGTTTATCATGATCGTACTAATTCCACAGATTTCATGACTGGAAATACTGAAATGCAGCACTCTGGTCTTGCTGAGAGTTCTAATCCAGATGCCAGCACTGTATCCAGGTTGCCACGGAGAAGATCAAGTTTCCCACCGTTAGCTCAGGCTCTTTTTGATGCCCTTAAGAAGAATAGGTCTCTTCAGAAGTTTATTAGAAGCAAGATGATTGAGATTGAAGCAAAAATTGAGGAAAACAAGCGACTTAGGAACAATGTTAAAATCCTTAAGGACTTCCAAGCTTCATGCATAAGAAGAACAGGGAGTGCTTTATCGCTAAAAAAGGATCCTCGTGTCCTGTTAATATCAGCACAAAAGAGTGATAGTAAAAGAAAATCTCCAATGTGTTTTGGCCCACCAGAGAATCGTCATGTTGCTAATTATAAGATGGTTTTAGAAAGATTTCCGCGTTCATTGGATCGAAAAAAATGGTCAAATGAGGAAAAGGAAAATCTTATGAAGGGAATTAAGCAACAATTCCAAGAATCGTTGGTAATAGCAATGAGTTCTGAAGTTCCACATGGAGATGGAAATTACATGGATAGCATAATGGAATATACTAACCAAGTTGATATTACACCGGAAATTATGAAAAAATATTTACCCGATGTTAATTGGGATAAGTTAGCTTCTACTCATGTTCCTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGGGAAGATCCCTTGATCAACCATGGACCATGGACTAGTGAAGAGGATAGGTTGCTTTTGCTTCTTGTCCAACAAATGGGAATTAGGAACTGGTTCGATATTTCCAAATCATTGGGCACGAACAGGACTCCATTTCAATGCTTGGCTCGATTTCAAAGGAGCTTGAATCCTTCGATGCTAAATAGGGAATGGTCTAAAGAAGAAGATGCTCAACTCTGTTCTGCTGTAGCTATTTATGGAGAGAGTAATTGGCAAGCTGTGGCTTCTGTTTTAGAAAGGCGGACAGGAACCCAATGCTCAAATAGATGGAAGAAATCACTTTTTCCCGAGAGAAAAGGGAGTTATACTCAAGAGGAGGACAAGCGCTTGACAGTGGCAGTCATGCTTTTTGGTCGGAAATGGAATCAAATAGCTAGATTTGTTCCTGGTCGGACCCAATGTCAATGTAGGGACAGATACGTGAATAGTTTGAACCCTTCTTTGAAATGGGGTGGATGGACTGACGAAGAGGATTCAAGATTGCAAGCTGCAATTGCTAAGCATGGATTCTGCTGGTCTAAGGTTGCTGAAGATATGCCCCCTCGTACTGATTCTCAATGCCGGAAGAGATTTAAGGTGTTATTTCCTGATCAAGCTTATTTGCTTCAAGAAGCAAGAAAGAAGCAAAAGTCTTTGATTGCTGGTAATTTTGTTGATCGAGAATCTGAACGCCCAAACCTTACACTGACTGATTTCCTTCCCTTACCTACATTATCTCCTCTTCCTTGTGAGGCTGATGATGAGAATCTCCCTAGGAAGAGGAAGAGGAAGTCAAGCAATGAACACAAGAAATTCAGGTCCAGAAGACCTGCAAAAAAGACACGAACAAATCACAATGATGGAAAGGATATTGATGAGGCCAAGATTTTTAATGGAGATGTCAATATTCCCAAAAGAACAAGGTCCAAGAAAAACTCAAGAAATACTTCAGTTCATGCTAAGGAAGCTGAGAATACAATACAAAATGCTGAGATCCAGGTTTGTAGTGGGAAACTAAGTAGAATCAAGGGCGCCAAAACATCAAAGAACAAACTAAAGAATAAAATGTTGAAACCTGAAAGCTTGTCTACTGTTGTTGAGTGTTCTGGAAGTCAAAATGAGGACAACACAACTCTTTCTTCCTTTCTACACATGAAGTTAAATAAGAGAGGGTTGAAATGCAACAAAAATAAGGGCGGGGCTGCCTCTGCATTTGCGACAAATGTTGTATCTAAGCAGGTTGATAATCAAAGCCCCTCTGCTGAGCAAGATGGCTTGTCTCAGTTGTGTGGTTCTGGTGGAGTTGAACATTTGGTTACGGTGCAAAACAACTCCGTTTCTGACAGGCTACTGAGAAAACCAGAGAATGTAAATAGGTTGACTGGTGATGAGGATGACAACGAAGATATCACCCTTGATTGCCTTGTGGGAAACAAATCAAAAGAATGTAGTCAGGTGACTAAAGGACCTTCTGTTTTATCTTCTTCCAAATCAAAACATGCGTCTGTTTTGCTTCCTGAAGTGCATTGCACAGAAAAGGCAGCCATCACAGCTGATTGCACCGGGCAGTTGACACCAAATCTTGTTGATGACCGATCCGTTTCACCTAGTAGTTTGGCTGAACCTACTACAACCTTCAATGCAGAGGAAGATGAACTGCTTGCTACCTTTCTGCAAAATAAGTCTAAGGGAGCACGAAGAAAGGTGAAACGTAAAGAAGGTAATTGCTAA 3078 0.4415 MAPRADQDSLSSTDDDESDDEGLKEDLAALSRAFDMSGADSTTPPDPVLQVDFDDDVRGGVSTAPPPAASTDLVVRTDSGDELRNDPLLATGDAVVSFDAVDSGGYESNEDIEYLQRLQSLYKPLATLPPPSPSPPPVDVFDDDDDDDVETVRAIFKRFADYDMRGLGTMTEGDQATSPGPERDIANGSTSSVIVEGGETCPVYHDRTNSTDFMTGNTEMQHSGLAESSNPDASTVSRLPRRRSSFPPLAQALFDALKKNRSLQKFIRSKMIEIEAKIEENKRLRNNVKILKDFQASCIRRTGSALSLKKDPRVLLISAQKSDSKRKSPMCFGPPENRHVANYKMVLERFPRSLDRKKWSNEEKENLMKGIKQQFQESLVIAMSSEVPHGDGNYMDSIMEYTNQVDITPEIMKKYLPDVNWDKLASTHVPGRTGAECESRWLNWEDPLINHGPWTSEEDRLLLLLVQQMGIRNWFDISKSLGTNRTPFQCLARFQRSLNPSMLNREWSKEEDAQLCSAVAIYGESNWQAVASVLERRTGTQCSNRWKKSLFPERKGSYTQEEDKRLTVAVMLFGRKWNQIARFVPGRTQCQCRDRYVNSLNPSLKWGGWTDEEDSRLQAAIAKHGFCWSKVAEDMPPRTDSQCRKRFKVLFPDQAYLLQEARKKQKSLIAGNFVDRESERPNLTLTDFLPLPTLSPLPCEADDENLPRKRKRKSSNEHKKFRSRRPAKKTRTNHNDGKDIDEAKIFNGDVNIPKRTRSKKNSRNTSVHAKEAENTIQNAEIQVCSGKLSRIKGAKTSKNKLKNKMLKPESLSTVVECSGSQNEDNTTLSSFLHMKLNKRGLKCNKNKGGAASAFATNVVSKQVDNQSPSAEQDGLSQLCGSGGVEHLVTVQNNSVSDRLLRKPENVNRLTGDEDDNEDITLDCLVGNKSKECSQVTKGPSVLSSSKSKHASVLLPEVHCTEKAAITADCTGQLTPNLVDDRSVSPSSLAEPTTTFNAEEDELLATFLQNKSKGARRKVKRKEGNC 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02983 1025 ProSiteProfiles Myb-like domain profile. 554 600 IPR001005 -
Aip05g02983 1025 CDD SANT 506 550 IPR001005 -
Aip05g02983 1025 CDD SANT 453 498 IPR001005 -
Aip05g02983 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 555 595 IPR017930 -
Aip05g02983 1025 ProSiteProfiles Myb-like domain profile. 499 550 IPR001005 -
Aip05g02983 1025 CDD SANT 557 600 IPR001005 -
Aip05g02983 1025 Gene3D - 552 606 - -
Aip05g02983 1025 Gene3D - 448 497 - -
Aip05g02983 1025 Gene3D - 498 549 - -
Aip05g02983 1025 SUPERFAMILY Homeodomain-like 580 653 IPR009057 -
Aip05g02983 1025 CDD SANT 609 651 IPR001005 -
Aip05g02983 1025 MobiDBLite consensus disorder prediction 221 240 - -
Aip05g02983 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 507 554 IPR017930 -
Aip05g02983 1025 ProSiteProfiles Myb-like domain profile. 446 498 IPR001005 -
Aip05g02983 1025 MobiDBLite consensus disorder prediction 697 744 - -
Aip05g02983 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 601 655 IPR017930 -
Aip05g02983 1025 ProSiteProfiles Myb-like domain profile. 351 445 IPR001005 -
Aip05g02983 1025 Coils Coil 267 287 - -
Aip05g02983 1025 ProSiteProfiles Myb-like domain profile. 601 651 IPR001005 -
Aip05g02983 1025 Pfam Myb-like DNA-binding domain 356 444 IPR001005 -
Aip05g02983 1025 Pfam Myb-like DNA-binding domain 608 650 IPR001005 -
Aip05g02983 1025 Pfam Myb-like DNA-binding domain 555 598 IPR001005 -
Aip05g02983 1025 SMART sant 605 653 IPR001005 -
Aip05g02983 1025 SMART sant 450 500 IPR001005 -
Aip05g02983 1025 SMART sant 554 602 IPR001005 -
Aip05g02983 1025 SMART sant 503 552 IPR001005 -
Aip05g02983 1025 SMART sant 355 447 IPR001005 -
Aip05g02983 1025 Gene3D - 355 447 - -
Aip05g02983 1025 Gene3D - 607 650 - -
Aip05g02983 1025 MobiDBLite consensus disorder prediction 730 744 - -
Aip05g02983 1025 MobiDBLite consensus disorder prediction 1 73 - -
Aip05g02983 1025 CDD SANT 413 444 IPR001005 -
Aip05g02983 1025 MobiDBLite consensus disorder prediction 712 729 - -
Aip05g02983 1025 SUPERFAMILY Homeodomain-like 426 495 IPR009057 -
Aip05g02983 1025 SUPERFAMILY Homeodomain-like 501 596 IPR009057 -
Aip05g02983 1025 Pfam Myb-like DNA-binding domain 454 515 - -
Aip05g02983 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 446 502 IPR017930 -
Aip05g02983 1025 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 14 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02983 Aip-Chr5 132035407 132041328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02983 231 698 MYB-Related Transcription Factor Family AT3G18100 52.546 6.11e-174 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g02983 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02983 K09422 - gmx:100818474 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02983 05 132035407 132041328 Aip05g02983 05 132035407 132041328 ECH