Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02982 ATGGGTATCAAGGATCTCCTGAAATTTATGAAGCCTTACACCGAACCTATCCACATAAAAAAGTACGCTGGCAAACGAGTGGGTATCGATGCATACTCATGGCTTCACAAGGGTGCTTATTCATGTAGTATGGAGCTTTGTCTAGATTCTGATAGTGAAAAGAAATTGCGGTACATTGAGTACTTTATGCATCGAGTGAACCTTCTTCGCTACTATAAAATAACACCGGTTGTTGTCTTTGATGGTGGCAATGTTCCTTGCAAAGCAGCAACTGAGCAAGAGAGGAATAAAAAAAGAAGTGCTAATCGTGAATTGGCAATGGCCAAGCTCAAAGAAGGAAATGTTATTGCAGCTTCAGAACTCTTCCAGAGAGCAGTTAACATTACTCCCCTGATGGCATATCAATTAATTCAGACTCTGAGATCAGAGAGCATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCCAATCTTGAAGTAGAAAAGGGTGGAATTGCTGCAGTGATCACAGAAGATAGTGATTTGATAGCTTATGGTTGTCCAGCTATTATTTTTAAGATGGACCGTGATGGGAATGGCGAAAGAATTGAGATAGAGAAGGTTTTTTGTGCCAAGTCCAGTAGACCTTCATTTCGGAATTTTGACATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCCTTAGTGTCCAAGTATAAGAACCTAGATCGTGTTTTGTCAGTTCTTAAGTTTGAGAAGGGTGATCAAATGCCTGAAGATTATGCAAAATCCTTCAAAGAGGCAATTGCAGTCTTTCAGCATGCTCGAATATATGATGCCAATGCTAAAGAGCTTAAGCACATGAAGCCTCTTCCCCAAGGTTTTCTTGAATCACTCGATGGAACCCTTGATTTCTTGGGACCAGAAATTCCATCAACTATAGTCACTGCAATAGCTGAAGGAGACTTAAACCCATCAACTAAGGAAGCCTTTGATAAGTCTGAAAGTCCTGGACTTTCTCTTAACCGTATCGCAGTCAAAAGCATTGGTCAAATAAAGAAAGTTGAGGTTCCAAAACAACTTACCAAGGAAAACTGCTTCTCAATCTTTGTCTCCCAAAACACCACTGAAAATAATACAGTGACAAGAGAAGAGTTGATCTCAGATAAAGAAAGACATTCAGTTGAAGAATTGGCACTTGAGAAACTAATCATGCCACTGGAAACAAATGAAACAATTGAAAAGACCATTATATTTGATGACACTCCTTTGAAGGTTCCTAACAACAACCCATTCAAGATAATGAAAACTGAGGAAACATCTTTTTCTGTTCAGACAGATAATAAAACCACATTTGAAAAGGTTTCTATTGCAAGCAATGAGGAATACATTGACTTGTGCACACCCCCAGATAGTTTTGAAGAAGAAAAGGAGTCTCAGAATCTCTCAAGAAAAAGGGAATTTCAGAACATTTGCTCAGATGAACCGGTCTCAGGAGTGACTCAAGAAGAACTAGATTCAGATGTTGTTTGCTTGAATGTGGAATCACAAGGGAGTGTGAATTCTAAGACAAGCATGAAAAATGGTTCAGGATCAAAAGGAAGATGTGGAAGAGAAAAACAATCAAAGAGAGGCAAGTTCAAGCAGGCTTTGACCGGGAATAGAACTATTTTGAGTTTCTTTTCTAGAGTGTAA 1743 0.3924 MGIKDLLKFMKPYTEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSEKKLRYIEYFMHRVNLLRYYKITPVVVFDGGNVPCKAATEQERNKKRSANRELAMAKLKEGNVIAASELFQRAVNITPLMAYQLIQTLRSESIEFVVAPYEADAQLAYMSNLEVEKGGIAAVITEDSDLIAYGCPAIIFKMDRDGNGERIEIEKVFCAKSSRPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGIARAHALVSKYKNLDRVLSVLKFEKGDQMPEDYAKSFKEAIAVFQHARIYDANAKELKHMKPLPQGFLESLDGTLDFLGPEIPSTIVTAIAEGDLNPSTKEAFDKSESPGLSLNRIAVKSIGQIKKVEVPKQLTKENCFSIFVSQNTTENNTVTREELISDKERHSVEELALEKLIMPLETNETIEKTIIFDDTPLKVPNNNPFKIMKTEETSFSVQTDNKTTFEKVSIASNEEYIDLCTPPDSFEEEKESQNLSRKREFQNICSDEPVSGVTQEELDSDVVCLNVESQGSVNSKTSMKNGSGSKGRCGREKQSKRGKFKQALTGNRTILSFFSRV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02982 580 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Aip05g02982 580 Pfam XPG I-region 145 235 IPR006086 GO:0004518
Aip05g02982 580 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Aip05g02982 580 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Aip05g02982 580 MobiDBLite consensus disorder prediction 536 561 - -
Aip05g02982 580 Gene3D - 218 291 - -
Aip05g02982 580 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Aip05g02982 580 CDD H3TH_FEN1-like 225 295 - -
Aip05g02982 580 Coils Coil 91 111 - -
Aip05g02982 580 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Aip05g02982 580 Gene3D - 1 212 - -
Aip05g02982 580 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 565 IPR006084 -
Aip05g02982 580 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Aip05g02982 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aip05g02982 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Aip05g02982 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Aip05g02982 580 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Aip05g02982 580 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 565 - -
Aip05g02982 580 SMART xpgn3 1 102 IPR006085 GO:0004518
Aip05g02982 580 SMART xpgineu 141 210 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02982 Aip-Chr5 132029893 132034532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02982 1 315 Core DNA Replication Machinery Family AT5G26680 24.847 2.09e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02982 K10746 - gmx:100817932 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02982 05 132029893 132034532 Aip05g02982 05 132029893 132034532 ECH