Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02938 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTAGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTATTGTAGCTGTTGATGAATATGTTATCCCTAAGACTTGTTTCAACATGCTTCCTTTTTCTGAGCTGCTAAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGGGAGAAGAGAAAGAGTATGCAAAAGAGGGGAAAATTGTGAAAATGATTGCGCTTGAATTAAGTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGGCTTCAAAATTTGATATATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAACGGTACCCAGCCACTATTTATTGCAAATGAGGGTAAAGTTGTATCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTATAATCCAAGGTATTGTCGAGGATGGAGCTTGTATGTGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACGATTATTGCCATGTTTGAGCTTCCCGATTATGATGCTGATGATGAGTCTACCCCAAAAAAGGAGGCTGATTTACACAAATCTGTTCCCTCTGGAAAAGGTGATATTGGTGTTAAGAAGGATTCATCAAAGAATTTTATCAAAAGTGAAAAAGTTTCTGGTGAGTCTTCTGGGATTTTATCTAAATCCCCAGTTCTTATAGATTTTCTGGCTGGAAAACAGCCTCCTATTTTTGGAAGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGGGAAAACACCTAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAAATAGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCTAAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCGGCTGTTGATGCAGATGGGCGTGGATTCAAGATTGCCAAGGTTAATGGAGTTTGA 1584 0.3889 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCRKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTIVAVDEYVIPKTCFNMLPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIALELSSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNLIYATQMLFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEEGSFIIFGIIQGIVEDGACMWDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKEADLHKSVPSGKGDIGVKKDSSKNFIKSEKVSGESSGILSKSPVLIDFLAGKQPPIFGRTEFASLINGEHGKDGKTPSNDTVSDDLSAEIDILLSSPEKETQEVLSHVIDAPSKYGEKLIHENDVVTSKGKRNLNPQFEEAAVDADGRGFKIAKVNGV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02938 527 PANTHER REPLICATION FACTOR A 1, RFA1 22 307 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip05g02938 527 CDD RPA1_DBD_A_like 19 107 - -
Aip05g02938 527 CDD RPA1_DBD_B_like 140 242 - -
Aip05g02938 527 Gene3D - 114 251 IPR012340 -
Aip05g02938 527 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Aip05g02938 527 MobiDBLite consensus disorder prediction 363 382 - -
Aip05g02938 527 Pfam Domain of unknown function DUF223 43 135 IPR003871 -
Aip05g02938 527 Gene3D - 4 112 IPR012340 -
Aip05g02938 527 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 307 - -
Aip05g02938 527 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02938 Aip-Chr5 131034196 131037082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02938 8 239 Core DNA Replication Machinery Family AT2G06510 27.160 2.70e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02938 - - adu:110280586 682.945