Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02908 ATGATCAATGGGCTCTGCAAAGAGGGATTGTTTGAAGAAGCATTGTCCCTGCTGTTGGAAATGGAAGACAATGATTGCTTATCAAATGCTGTGACTATTGAAACAAGGAAGTCTGTACAGACACTAATTCATCCACCAAACAATCAATTAGATGACCGAAGGCAGTTGAGGATGGCCCTCGATACTGCCCGAGGAATGAACTATTTGCACAACTGCACTCCAGTGATTGTACACCGTGATTTGAAGTCACCAAATCTTCTTGTGATAAAAATTGGGTTGTGA 282 0.4184 MINGLCKEGLFEEALSLLLEMEDNDCLSNAVTIETRKSVQTLIHPPNNQLDDRRQLRMALDTARGMNYLHNCTPVIVHRDLKSPNLLVIKIGL 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02908 93 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Aip05g02908 93 Gene3D Transferase(Phosphotransferase) domain 1 36 91 - -
Aip05g02908 93 TIGRFAM PPR: pentatricopeptide repeat domain 1 29 IPR002885 -
Aip05g02908 93 Pfam PPR repeat 1 26 IPR002885 -
Aip05g02908 93 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g02908 93 Pfam Protein tyrosine and serine/threonine kinase 15 89 IPR001245 GO:0004672|GO:0006468
Aip05g02908 93 SUPERFAMILY Protein kinase-like (PK-like) 15 88 IPR011009 -
Aip05g02908 93 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 36 88 - -
Aip05g02908 93 Gene3D Tetratricopeptide repeat domain 1 35 IPR011990 GO:0005515
Aip05g02908 93 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 28 IPR002885 -
Aip05g02908 93 PANTHER OS06G0232100 PROTEIN 36 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02908 Aip-Chr5 130580153 130581299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02908 36 90 MAP Kinase Kinase Kinase AT1G18160 78.182 4.00e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Aip05g02908 PK_Tyr_Ser-Thr 1.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02908 - - nto:104121276 96.6709