Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip05g02832 | ATGTCTTCCGCTGTAGGTTATCAACCGACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACTAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCCGCAGACGATTTGACCGACCCTGTCCCTGCTACGACATTTGCACATTTGGATGCTACGACCGTACTATCAAGAGGATTGACTGCTAAAGGTATCTATCCAGCTGTAGATCCTTTAGATTCAACGTCAACTATGCTCTAA | 255 | 0.4196 | MSSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPVPATTFAHLDATTVLSRGLTAKGIYPAVDPLDSTSTML | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip05g02832 | 84 | PANTHER | ATP SYNTHASE | 1 | 84 | - | - | |
| Aip05g02832 | 84 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 1 | 81 | IPR000194 | GO:0005524 | |
| Aip05g02832 | 84 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 83 | IPR027417 | - | |
| Aip05g02832 | 84 | PANTHER | F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT | 1 | 84 | - | - | |
| Aip05g02832 | 84 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 72 | 81 | IPR020003 | GO:0005524 | |
| Aip05g02832 | 84 | Gene3D | - | 1 | 84 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip05g02832 | Aip-Chr5 | 129411588 | 129411842 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip05g02832 | 6 | 84 | Primary Pumps ATPases(2) | AT1G20260 | 30.864 | 1.95e-06 | 42.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip05g02832 | K02112 | - | ncol:126409621 | 159.844 |