Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02781 ATGGGTGAGAATGTGATTCCTGATCTATCACTGCAGATAAGCCTGCCAAAGAGTGCTCCACCATCAATATGCAATAATGAAGAAGAAGGAGATTGTGGAGGGTTTGATATATGGAGAAGTAGCACTACTACTAGTGATGGTGCTGAAAAATCACACAGTGATGGTTCCATTTCAATCCCTACTTTTCTTCATCATCATAAGAACATGGAGACACAACTCTCTTTAGCAGCACCTACAACCCCAACCCCTTCTGAAGCTGAAAGCCCTTGGAACAAATCATCATCATCAGAGCAAGTAGTAATTAGGCCTATCAATGGAATCCCTCTTTACAACAACAACAACAACAACACCAACACTCCTTCTTCGCCACTTTCAAGGTTTAATAATGCTATAACTATGGAGAGTCTAAGAACCCTTAATCACCATCACTTATTTGGGGTTATTGGGGGTGCTAACAACAACACTGACTTCACAAACGGGTTTGTGATGAGGTCTAGAATGTTCCCATCATCAACAACAACAACAAGGATGATGATTCATAGCAGCAAGAGGAACATGAGGGCTCCAAGAATGCGCTGGACTACCTCCCTCCATGCCCGATTTGTTCATGCTGTTCAACTCCTTGGCGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTGGAACTCATGGATGTCAAAGATCTAACACTCGCTCATGTCAAGAGTCACTTACAGATGTATAGAACTGTTAAGAATACTGACAAGCCAGCAGCTTCCTCAGCATCAGATGGAGATGAAGATTTCATGTCCCTAGCATCACCCATTAGTCAAAATAAGAACTTTTTACCAAATCAAAGAGGGCCCCCAAATAATAATAATGCATCTCTAGATCAAGATTTGGGATACAACACCACTACTGCTACTACTTGCAGCAATAAAAATCTATGGGGTAATTCTTCTTCCAGTAGAGAAGCATGGATACAAGCCAACGAGCTTAGTCCAGAAACCCTATCATCTCAACACATTATTGGGAAGCTCTCCGAGGGAAGCAACCATATACAATCAAGAAGCTTCAAGGATCAAAATAATTTAGATTGTCAGAATAATCCAAGCTTGGAATTCACCTTAGGGAGATGA 1116 0.4158 MGENVIPDLSLQISLPKSAPPSICNNEEEGDCGGFDIWRSSTTTSDGAEKSHSDGSISIPTFLHHHKNMETQLSLAAPTTPTPSEAESPWNKSSSSEQVVIRPINGIPLYNNNNNNTNTPSSPLSRFNNAITMESLRTLNHHHLFGVIGGANNNTDFTNGFVMRSRMFPSSTTTTRMMIHSSKRNMRAPRMRWTTSLHARFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSASDGDEDFMSLASPISQNKNFLPNQRGPPNNNNASLDQDLGYNTTTATTCSNKNLWGNSSSSREAWIQANELSPETLSSQHIIGKLSEGSNHIQSRSFKDQNNLDCQNNPSLEFTLGR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02781 371 MobiDBLite consensus disorder prediction 270 294 - -
Aip05g02781 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 189 242 IPR006447 GO:0003677
Aip05g02781 371 MobiDBLite consensus disorder prediction 76 97 - -
Aip05g02781 371 Pfam Myb-like DNA-binding domain 190 241 IPR001005 -
Aip05g02781 371 SUPERFAMILY Homeodomain-like 186 243 IPR009057 -
Aip05g02781 371 MobiDBLite consensus disorder prediction 36 58 - -
Aip05g02781 371 Gene3D - 188 245 - -
Aip05g02781 371 MobiDBLite consensus disorder prediction 244 263 - -
Aip05g02781 371 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 5 121 - -
Aip05g02781 371 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 154 371 - -
Aip05g02781 371 MobiDBLite consensus disorder prediction 37 58 - -
Aip05g02781 371 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 121 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aip05g02781 371 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 154 371 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02781 Aip-Chr5 128088101 128096227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02781 102 371 G2-like Transcription Factor Family AT5G16560 42.071 3.71e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip05g02781 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02781 - - aip:107644092 731.095