Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02778 ATGGGCAAGTCAAACGGTTTGTCTCCAGATGAAAGTGAAAACGAGTTATGCCTTTCAAACAACAACGTTGTTGATGAGAATGACTTAAGAAAGGTTGAGTTGTTGTCGGATGAAGATGGTCGTGAATATGGTTACGTGACTGGGTTGACTGCAGAGGATATAATGAAAAAGTTGTTTCGAAGTGAAGAGCGTGCATATGAGTTTTATGGTAGGTTAGGGGAATGCAACGGATTTGGGGTCCGTAAGGGAGACTATGCAAAGGATGAAGATGGGAGTGTAGTGAGAAGGAGGTTCTTCTGTAATCGGGCTGGCCTAAGGGATGGAAAACACTACAACAGACTAGACAGGAAGAGATGCCATAGGCCTGAGACATGCACGAATTGCCAGGCCCTGATGTCTGTATACCTTGATAAGGGTAGCTCGGTTTGGAAGGTTCGGAAAGTAATCCTCGAGCATAACCACGAGTTGATACCGATGGGAATGGTTCACATGATCCGAAGTTTCCGGGCGATATCGGGTTCTGCAAAGGCCCACATGGATGGAATGCATACGTATGGGTTGCCGACATCTAAGATATTGGGGTACATGGCTGGGATTATGGGTGGTTATTCTTCTTTGGGTTTTACCAGGAAAGACGCATACAACTATATGGATCGGTTGAAGCATGAAAAGGTGGTTGATGGAGACATGAACGCTGCTATAGTATACCTGGAAGGCAAGGCAACTGCTGATCCCATGTCTATGGCCCAGTACAATTTGACTGAAGAAGGTATGTTGGGAAACATGTTCTGGGCAGATGGTCCTAGCAGGGTTGATTTTCAACACTTTGGAGACGTCGTTGCATTCGATTCGACGTATAAGAAGAACAAGTACAATAGACCCGTTGTCATATTCTTAGTCGTTACCGACGGAGATGAATCAATGATTGCTGTAGTTAGGGAGGTGTTGCCCCGGAAAACCCATAGGTTGTGTGCATGGCATCTGCAGAAGAATGTGACCTCGAACACCAACGAGCAGATGTTCCGTGATGTCTTTGCCAAGTGGTTGTATGCTGACATGGAGGTTGAAGAGTTTGAGTGTGAATGGGCACATGTTGCTGAACAGTATGGGTTACTTAATAAGTATTCGGCGTTATAA 1137 0.4538 MGKSNGLSPDESENELCLSNNNVVDENDLRKVELLSDEDGREYGYVTGLTAEDIMKKLFRSEERAYEFYGRLGECNGFGVRKGDYAKDEDGSVVRRRFFCNRAGLRDGKHYNRLDRKRCHRPETCTNCQALMSVYLDKGSSVWKVRKVILEHNHELIPMGMVHMIRSFRAISGSAKAHMDGMHTYGLPTSKILGYMAGIMGGYSSLGFTRKDAYNYMDRLKHEKVVDGDMNAAIVYLEGKATADPMSMAQYNLTEEGMLGNMFWADGPSRVDFQHFGDVVAFDSTYKKNKYNRPVVIFLVVTDGDESMIAVVREVLPRKTHRLCAWHLQKNVTSNTNEQMFRDVFAKWLYADMEVEEFECEWAHVAEQYGLLNKYSAL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02778 378 PANTHER OS02G0262500 PROTEIN 52 299 - -
Aip05g02778 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 300 369 IPR031052 GO:0006355
Aip05g02778 378 Pfam Transposase, Mutator family 297 377 IPR001207 GO:0003677|GO:0004803|GO:0006313
Aip05g02778 378 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 299 IPR031052 GO:0006355
Aip05g02778 378 PANTHER OS02G0262500 PROTEIN 300 369 - -
Aip05g02778 378 Pfam FAR1 DNA-binding domain 67 157 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02778 Aip-Chr5 127861586 127862848 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g02778 FAR1 1.2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02778 - - aip:107633916 543.502