Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02759 ATGTTAGCGAATAACTCTTCAGTAGCTCCAAGTTCAGAACCATTTTCTTGTGCTGATAATAATAATGGCACTCCGAGCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCGCTGTCGCCAAAGACGTTATTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAGGGCTTCCAAAGGGACCAGAACCTGCAGATGCATCGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTAAAGAGGGAGACGCCGGTGGTCAGGAAGAGGGTCTTCGTGTGTCCGGAGCCTACTTGCCTGCACCACGACCCTTGTCACGCGCTCGGAGACCTTGTTGGGATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAACAGTGGGTCTGCGAGCGCTGCTCCAAGGGCTACGCGGTGCAGTCCGATTACAAGGCTCACCTCAAGACCTGCGGCACTCGCGGCCACTCTTGTGACTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGGAGGCTTAGGACAGAATCTCATCATAATCATAATCATAATCATCAACAACCACCAACTCCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGAAGTGAAACCAATTTCAGCACTGCTCCATGGCAACCAACATCATCAACAACAACAACAACACCAACAAGCCTTGTTGTGATCGCAAAACCAATAACAACAACAACAGAACCACCTTTCTTCAACAACACTAACCCTACCCCAATTCTAGCCACTGCTGAAACATTCCTATTCAAGAAGAGTAACACCAGCAACAAACTCCTTCACCCAAACTTGGATCTTCAACTCTCCACCACCACCACCACCACCATGATGATGAACAACAACAATTCGATCCCCAATAACAAGCATGCGACAGCAACAAGCATGGCTTTACGGGTTCAAGAACAAGCGAGGGAGCAACTAAGGTTAGCCATGGCGGAGAAAGCGTACGCAGAAGAAGCAAGGAAACAAGCAAAGAGGCAGATAGAAATGGCGGAACAAGAGTTCAACAATGCAAAGAGGATAAGGCAACAAGCGCAAGCTGAACTCGACAAAGCTTGCGCTCTCAAGGAACATGCAATGAAGAAGATAAACTCAACCATCATGCAAATCACGTGCCATTCTTGCAAGCAACACTTTCATCTTCAACCACCACCAGTATCTGCTACAGCACCACCAGATGAAAATTCCTTGGTTCTCAGTTACATGTCTTCTGGAATCACCACCGAAGGTGCTGGAGAA 1320 0.4864 MLANNSSVAPSSEPFSCADNNNGTPSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESHHNHNHNHQQPPTPTACLSRTASSPSPSRSETNFSTAPWQPTSSTTTTTPTSLVVIAKPITTTTEPPFFNNTNPTPILATAETFLFKKSNTSNKLLHPNLDLQLSTTTTTTMMMNNNNSIPNNKHATATSMALRVQEQAREQLRLAMAEKAYAEEARKQAKRQIEMAEQEFNNAKRIRQQAQAELDKACALKEHAMKKINSTIMQITCHSCKQHFHLQPPPVSATAPPDENSLVLSYMSSGITTEGAGE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02759 440 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 435 - -
Aip05g02759 440 MobiDBLite consensus disorder prediction 190 241 - -
Aip05g02759 440 PANTHER OS03G0310200 PROTEIN 1 435 IPR039288 GO:0009630
Aip05g02759 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Aip05g02759 440 MobiDBLite consensus disorder prediction 198 241 - -
Aip05g02759 440 Gene3D Classic Zinc Finger 45 130 - -
Aip05g02759 440 Coils Coil 334 389 - -
Aip05g02759 440 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Aip05g02759 440 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Aip05g02759 440 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Aip05g02759 440 MobiDBLite consensus disorder prediction 1 44 - -
Aip05g02759 440 MobiDBLite consensus disorder prediction 1 29 - -
Aip05g02759 440 SMART c2h2final6 134 161 IPR013087 -
Aip05g02759 440 SMART c2h2final6 98 128 IPR013087 -
Aip05g02759 440 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02759 Aip-Chr5 127354701 127357630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02759 24 440 C2H2 Transcription Factor Family AT2G01940 57.143 2.34e-151 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g02759 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02759 K25871 - gmx:100800187 590.882