Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02734 ATGTGTACTAGAGGACATTGGAGACCAGCTGAAGATGAGAAGCTTAGGGAGCTGGTGGAACGTTATGGACCTCATAATTGGAATGCCATAGCTGAGAAGCTCCGTGGAAGATCAGGGAAAAGTTGTAGGTTAAGATGGTTCAATCAATTGGACCCAAGAATAAATAGAAACCCGTTCACAGAGGAAGAAGAAGAACGGCTTTTAGCATCTCATAGTATTCATGGAAATAGATGGTCAGTGATTGCAAGACACTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGAATACGCAGAGAAAGATCTAAAGTTTATGCAAAACGACCACTTCATCATAGAACATTTTTTTCTCCAAACCTTCAACAACAACAACAACAAGAGGATCATGATGATGAGACAACAAACTTTGACACAAAAAATAATATATCATACTGTCTTGTTGACAAGTTTCATGGAAAATATAGCTACCCTGCTTGTCTCACTTATGCTACTTTCCAACTTCCTAACAAGTTTCACTTTCAAGGTCCAAGTTCTTGTGCTACATTGCTTCAAGAAAGAAGTCAATCAATTGAGTTCTATGACTTTCTTCGAGTAAACACAGATTCCAACAAGAGTGAAGTGAGTAACAACAATGGCAAAAAGGAAGATGAAGAAGTGAATCAAGATCCTCTGGGGCATCACCACAACAAGGATGGAATTCCATTCATTGATTTTTTGTCTACTCAAAGTTCCTAA 756 0.3862 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLLASHSIHGNRWSVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYAKRPLHHRTFFSPNLQQQQQQEDHDDETTNFDTKNNISYCLVDKFHGKYSYPACLTYATFQLPNKFHFQGPSSCATLLQERSQSIEFYDFLRVNTDSNKSEVSNNNGKKEDEEVNQDPLGHHHNKDGIPFIDFLSTQSS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02734 251 Gene3D - 4 55 - -
Aip05g02734 251 ProSiteProfiles Myb-like domain profile. 4 50 IPR001005 -
Aip05g02734 251 MobiDBLite consensus disorder prediction 122 142 - -
Aip05g02734 251 Gene3D - 57 140 - -
Aip05g02734 251 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Aip05g02734 251 Pfam Myb-like DNA-binding domain 7 67 - -
Aip05g02734 251 PANTHER MYB PROTEIN-RELATED 1 250 - -
Aip05g02734 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Aip05g02734 251 MobiDBLite consensus disorder prediction 209 241 - -
Aip05g02734 251 CDD SANT 7 48 IPR001005 -
Aip05g02734 251 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Aip05g02734 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Aip05g02734 251 PANTHER MYB-RELATED PROTEIN A-LIKE 1 250 - -
Aip05g02734 251 CDD SANT 58 101 IPR001005 -
Aip05g02734 251 SMART sant 55 103 IPR001005 -
Aip05g02734 251 SMART sant 3 52 IPR001005 -
Aip05g02734 251 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02734 Aip-Chr5 126839615 126845550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02734 1 251 MYB Transcription Factor Family AT1G17950 52.569 6.63e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g02734 Myb_DNA-bind_6 8.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02734 K09422 - gmx:100811746 334.339