Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02722 ATGGCTAGCTTTGAGAAAGATGAGGAGCCAATGCTGTTAGAAACACGTGGGCCGCGATCTGATGAACATGTGGATTCTAATTTCCGGAGGCTTGTGACAAGGACACGAAGTGCATCAATGTCGATTCCCATGGTCTCCATGGAATCATCCGACAGAGAAGCTACTTTTGTGGGGCATACTGGTCCACTACGTACTGTGAGAAAAACCCCTTTTCCTCAAATGAGTGGTCCACTCTATCCCACCCAAGGAACTGGAAATCCTTTACAGCGTAGCAGAGTTGTGGCAGGAAACAATGTAGGGGAGAGCAGGACAGAAAGGTTCCGCAACACAGGTGAAAGTCATTGGAATAACAACAATGATAGGAAGAATGAACACTTACTGAGGTCTGGGCAATTGGGAATGTGTAACGATCCTTATTGTACTACTTGCCCTGCTAACTTTAAGGCTGCCCAACAAGGAAATTCAAGAACTTTGTATAGACGTGATCCCGTGTTCCATAATGTTCTCTATGGAGATGCCAAGGGTTTCGCTAGAAAAGTTTACTCATTTTTCTCTTCTCATATTCCTGGAGTTATGAATCCTCACAATAAAGTTGTGCAACAATGGAACAAGGCTTTGGCTATTTCTTGTTTGGTGGCAATTTTTCTAGATCCATTATTTTTCTTCTTACTGAATGCGCGGGAGGATTTGAAATGTATTGTTATCAACTGGCCAATGACAGCTACACTTGTTTTGTTTAGAAGCTTGAATGATGCCATATATTTCTTGAACATTCTTCTTCAGTTTAGGTTGGCTTATGTTTCTCCCGAGTCAACAGTGGTTGGTGCCGGAGATTTAGTTGACCATCCGAAGAAAATTGCTTTACATTACCTATGGGGCTATTTTTTGCTTGATTTATTTATTGTGATTCCCCTTCCTCAGATAATGCTTTATTTCATTATACCAACCTACTTGGGTTTCTCAGGGGCAAATTATGCTAAGAATCTTCTGCGTGCAGCTATCCTTGCGCAATACATGCCTAGACTATTCAGGTTTCTGCCTTTGCTAATTGGCCAGTCTCCAACAGGGTTCATATTTGAGTCGGCATGGGGGAATTTTATTATAAATCTTCTTATTTTTATGCTATCGGGACATGTTGTTGGCTCTTGCTGGTACCTCTTTGGCCTACAAAGGGTTAATCAATGTTTTCGAAACGCCTGCTCTAATTCTACTCTTCCTGGATGCAAGAATTACATTGATTGTGGCCTGTCTACCGACACACCAATTGAGTGGCATAATAATGAAAATGCCACTAATTGTTTGAACTCCAGTTCTGGTGTTTTTGAATATGGGATTTATGCCAATGCTGTAAGACTTACCACAGAAACTAATGTGGTCAAGAAATATGTGTATGCTCTGTTTTGGGGTTTCCAGCAAATAAGTACTCTTGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTGTTCACAATGGCCATCATAGGGCTAGGACTCTTGCTTTTCGCACTTCTTATTGGAAACATACAAAATTTTCTTCAAGGCCTTGGGCGAAGGAGATTGGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGGTCTAAGAAGGAGAGTAAGACAAGCTGAACGATATAATTGGGCTGCAACAAGAGGGGTAAATGAAGAAATTCTTCTAGAGAATATGCCAGAAGATCTCCAAAGAGACGTAAGACGCCATCTGTTCAAATTTATCACGAAAGTTCGAATTTTCGCCTTGATGGATGAGCCCATCTTGGATGCCATTTGTGAGAGGCTTAGACAAAAGATATACATAAAAGGAAGTAATATCTTGTATCAAGGTGGTCTAGTGGAGAAGATGGTCTTTGTTGTGCGTGGGAAATTGGAGAGCATTGGAGAAGATGGAACTAAAATTAACTTAACCGAAGGGGATGCTTGTGGTGAAGAACTCTTGAGATGGTATCTAGAGAATTCATCAGTTAGCACAGATGGTAGAAAAGTAAGGCTACCTGGACAAAGGTTGCCGAGCAGCAGGACAGTAACGTGCATAACAAACGTGGAGGCATTTTCACTCCGAGCTGCTGACCTTGAAGAAGTAACGATCATTTTCACTAGATTCTTGCGGAGTCCACGTGTTCAAGGAGCTCTAAGATACGAGTCGCCTTATTGGAGATCCCTTGCAGCAAGCCGAATTCAGGTTGCATGGAGATACAGGAAGAAACGACTAAACCGTGCCGCGTCACAACTAGATTAG 2280 0.4224 MASFEKDEEPMLLETRGPRSDEHVDSNFRRLVTRTRSASMSIPMVSMESSDREATFVGHTGPLRTVRKTPFPQMSGPLYPTQGTGNPLQRSRVVAGNNVGESRTERFRNTGESHWNNNNDRKNEHLLRSGQLGMCNDPYCTTCPANFKAAQQGNSRTLYRRDPVFHNVLYGDAKGFARKVYSFFSSHIPGVMNPHNKVVQQWNKALAISCLVAIFLDPLFFFLLNAREDLKCIVINWPMTATLVLFRSLNDAIYFLNILLQFRLAYVSPESTVVGAGDLVDHPKKIALHYLWGYFLLDLFIVIPLPQIMLYFIIPTYLGFSGANYAKNLLRAAILAQYMPRLFRFLPLLIGQSPTGFIFESAWGNFIINLLIFMLSGHVVGSCWYLFGLQRVNQCFRNACSNSTLPGCKNYIDCGLSTDTPIEWHNNENATNCLNSSSGVFEYGIYANAVRLTTETNVVKKYVYALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQGLGRRRLEMQLRGRDVEQWMSHRRLPEGLRRRVRQAERYNWAATRGVNEEILLENMPEDLQRDVRRHLFKFITKVRIFALMDEPILDAICERLRQKIYIKGSNILYQGGLVEKMVFVVRGKLESIGEDGTKINLTEGDACGEELLRWYLENSSVSTDGRKVRLPGQRLPSSRTVTCITNVEAFSLRAADLEEVTIIFTRFLRSPRVQGALRYESPYWRSLAASRIQVAWRYRKKRLNRAASQLD 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02722 759 CDD CAP_ED 592 708 IPR000595 -
Aip05g02722 759 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 756 - -
Aip05g02722 759 SMART cnmp_10 592 727 IPR000595 -
Aip05g02722 759 Gene3D Jelly Rolls 590 714 IPR014710 -
Aip05g02722 759 SUPERFAMILY Voltage-gated potassium channels 194 520 - -
Aip05g02722 759 ProSiteProfiles cAMP/cGMP binding motif profile. 592 660 IPR000595 -
Aip05g02722 759 MobiDBLite consensus disorder prediction 1 23 - -
Aip05g02722 759 Gene3D - 203 516 - -
Aip05g02722 759 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 756 - -
Aip05g02722 759 Pfam Ion transport protein 204 519 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip05g02722 759 MobiDBLite consensus disorder prediction 62 90 - -
Aip05g02722 759 Gene3D Helix hairpin bin 519 584 - -
Aip05g02722 759 SUPERFAMILY cAMP-binding domain-like 520 709 IPR018490 -
Aip05g02722 759 MobiDBLite consensus disorder prediction 75 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02722 Aip-Chr5 126552316 126563966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02722 1 670 Ion Channels AT3G17700 61.912 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02722 K05391 - ccaj:109789004 1167.53