Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02711 ATGGAGTATGGTAGCGGAGGGAGTGGTGGGTCCCCAGGGGAGCACCACCATCACCACCACAATCACAACGACGCTTCTTCTTCCGAGCGGAGGAAAAAGCGCTACCACCGTCACAGTGCCAATCAGATTGAAAGGCTTGAAAGGGTGTTCAAGGAGTGTAATCACCCAGACGAGAAGCAGAGATTGCAGTTAAGCAGAGAATTAGGCTTGGCTCCAAGGCAGATCAAATTTTGGTTCCAGAACAGAAGGACCCAGATGAAGGCGCATGGAGAGAGAGCAGATAACTGTGCACTGAGGGCAGAGAATGATAAGATACGTTGCGAGAACATAGTCATAAGGGAGGCCCTCAAGAACGTTATCTGCCCCTCTTGTGGTGGTGGCCCCTCCCTCAACGACGATTCCTATTTCGATGAACAAAAATTGAGACTTGAGAATGCCCAACTAAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCGGCTAAGTACATTGGAAGGCCAATTTCACAGCTCCCACCGGTTCAGCCAATTCATATATCCTCCCTTGATTTGACCATGTCGAGTTTCGGGGGCCACGCCGGGTTCGGTGGCGGCCCCTCCCTCGACCTTGACCTCCTTCCGGGGAGTTCCTCGGCTATGCCGCCGCATGTGCCTTACCAGCCGGCTTGTCTCTCGGACATGGACAAGTCTCTAATGTCAGGCATTGCCTCTAACGCCATGGAGGAATTGCTGAGCCTCTTGCAGACCAATGAGCCGTTGTGGATGAAATCAAGTGATGGGAGAGATGTTCTTAATTTTGATGCATATGATAGGATGTTTCCAAAGGCTAATAGTCACTTGAAGAACCCCAATGTTAGGATAGAAGCTTCTAGAGACTCTGGTGTTGTTATCATGAATGGCCTAACCTTGGTTGACATGTTCATGGACCCAAGCAAGTGGATGGAGCTGTTTCCCACAATTGTAACGGCTGCAAGAACAATTGAAGTTATATCTTCTGGGATGATGGGTGGTCATAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTGTCTCCACTTGTTTCAACAAGAGAATTCTACTTCCTCCGTTATTGTCAGCAAATTGAGCAAGGTCTATGGGCAATAGTAGATGTTTCCTATGATTTTCCACAGGACAATCACTTTGCTCCGCCGTTCCGATCTCATCGCCTTCCTTCCGGTTGCTTCATTCAGGACATGCCTAATGGATACTCCAAGGTTACATGGGTTGAACATGTAGAGATCGAAGACAAAACTCCGGTTCATCGTCTTTTCCGGAATCTTGTTTATAATGGAATGGCATTTGGAGCTCAGAGATGGCTTGCGGTGCTGCAGAGGATGTGTGAAAGATTGGCTTGTTTAATGGTAACAGGAAATTCCACCAGGGACCTTGGAGGAGAGGGAAAAAGGAGCATGATGAGGCTTGCACAAAGAATGGTAACCAATTTTTGCGCGAGCATTGGCACGTCGGCCGGCCACAGGTGGACCACACTGTCCGGGATGAATGAGATTGGTGTCAAGGTCACTGTCCACAAGAGCACAGACCCCGGTCAACCTAGCGGCGTGGTGCTGAGCGCCGCCACCACCATTTGGCTCCCTCTCCCTCCACAAACCGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGACCACAGTGGGATGTTCTTTCTAATGGCAATGTACAAGAAGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGTATATCTGTGCTTCGGGCATACAACACAAGCCAGAATAACACACTGATACTACAAGAGAGTTGCATAGATCCATCAGGCTCCATAGTAGTATACTGTCCGGTTGAGCTTCCATCGATCAACATAGCAATGAGCGGCGAGGACCCGTCGTATATCCCCCTGGTACCGTCAGGTTTCACGATCACCCCTGACGGAAACCACCACGATCATCAAGCAGGCGGTGACGGGGCATCCACAAGCTCAACCCCGAGCAGAAGCAGCAGCACCATGGTGGGAATGAGATCCGGCGGGTCACTGGTGACGGTTGCATTCCAAATACTAGTGAGTAGCTTGCCATCTGCAAAGCTCAACATGGAGTCTGTAGCAACTGTTAATAACCTCATCAGCACCACTGTTCAGCAAATTAAAGCTGCTTTGAATTGTCCTACTTCCTGA 2178 0.489 MEYGSGGSGGSPGEHHHHHHNHNDASSSERRKKRYHRHSANQIERLERVFKECNHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAHGERADNCALRAENDKIRCENIVIREALKNVICPSCGGGPSLNDDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLTMSSFGGHAGFGGGPSLDLDLLPGSSSAMPPHVPYQPACLSDMDKSLMSGIASNAMEELLSLLQTNEPLWMKSSDGRDVLNFDAYDRMFPKANSHLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPSKWMELFPTIVTAARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNHFAPPFRSHRLPSGCFIQDMPNGYSKVTWVEHVEIEDKTPVHRLFRNLVYNGMAFGAQRWLAVLQRMCERLACLMVTGNSTRDLGGEGKRSMMRLAQRMVTNFCASIGTSAGHRWTTLSGMNEIGVKVTVHKSTDPGQPSGVVLSAATTIWLPLPPQTVFNFFKDERKRPQWDVLSNGNVQEVAHIANGSHPGNCISVLRAYNTSQNNTLILQESCIDPSGSIVVYCPVELPSINIAMSGEDPSYIPLVPSGFTITPDGNHHDHQAGGDGASTSSTPSRSSSTMVGMRSGGSLVTVAFQILVSSLPSAKLNMESVATVNNLISTTVQQIKAALNCPTS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02711 725 MobiDBLite consensus disorder prediction 654 674 - -
Aip05g02711 725 MobiDBLite consensus disorder prediction 643 674 - -
Aip05g02711 725 CDD homeodomain 31 87 IPR001356 GO:0003677
Aip05g02711 725 Coils Coil 138 158 - -
Aip05g02711 725 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Aip05g02711 725 SMART START_1 233 457 IPR002913 GO:0008289
Aip05g02711 725 SUPERFAMILY Bet v1-like 225 458 - -
Aip05g02711 725 MobiDBLite consensus disorder prediction 1 38 - -
Aip05g02711 725 SUPERFAMILY Homeodomain-like 12 88 IPR009057 -
Aip05g02711 725 SMART HOX_1 30 93 IPR001356 GO:0003677
Aip05g02711 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 13 723 - -
Aip05g02711 725 Gene3D - 15 102 - -
Aip05g02711 725 ProSiteProfiles START domain profile. 224 460 IPR002913 GO:0008289
Aip05g02711 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 723 IPR042160 -
Aip05g02711 725 Pfam START domain 235 457 IPR002913 GO:0008289
Aip05g02711 725 MobiDBLite consensus disorder prediction 12 30 - -
Aip05g02711 725 SUPERFAMILY Bet v1-like 474 717 - -
Aip05g02711 725 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Aip05g02711 725 CDD START_ArGLABRA2_like 228 456 - -
Aip05g02711 725 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Aip05g02711 725 Gene3D - 232 457 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02711 Aip-Chr5 126122742 126126185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02711 28 725 Homeobox Transcription Factor Family AT1G73360 63.983 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g02711 START 1.7e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02711 K09338 - gmx:100809075 1176.77