Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02707 GCTGGTGGGGTTGGTCCCTGTGAAGCTTAGGGTGTTTACAAGGACTGGCTCTGATTTTGCTCCAATGGAGATGCAGGACCAAATCGAAGGCACAAAGCTAAGCAAGTCTGGTACAGCCAGTGACTTCCATTCCAATGATGGATCACAATCCCAATCGCCGGATATAAGTTCTGTTGGGAACAATCATGCCCCCAAGGTGAGGAAACCATATACCATCACTAAGCAAAGGGAGAAGTGGACTGAGGAAGAGCATGAAAAGTTCCTTGAAGCTTTGAAGTTGTATGGTCGGGGATGGCGTCAAATTGAAGAGCATATAGGCACCAAAACTGCTGTTCAGATTCGAAGCCATGCACAAAAGTTTTTCTCTAAGGTTGTGCGGGAATCGGACGGAAGTGCTGAAAGTTCTATACATCCGATTGACATACCTCCTCCTCGTCCTAAAAGGAAACCCCTTCATCCATATCCTCGTAAATTGGCCAACTCCTTCAAAAGGCACTCCAGACCAAATGAACCAGAAAAATCTCCATCGCCTAATCTGTCCTCTGCGGAGAAAGACTCTCAATCTCCAACCTCTGTGCTATCTGCCTTTGGTTCGGAAGCATTTGGGTCAGCATTTTCAGAGCATACCAACAGATGCCTTTCTCCGAATTCTTGCACTACTGACATTCAATCAATTAACTTGTCACCTATTGAGAAGGAAAATGATTGCATGACATCTAAACCATCCAAGGAGGAAGACAAAACGCCTCTAGCTTCTGCCGCTTTATCCATTAGCTCACAACCTTACTTGCACATGAAGTCTGAGAAGTTGGAGTTGTGTTCCAAGCAAACCAAGTGTATCAACAACGATGTTGTCAATGTCCTGCCCACTACTATAAAGCTGTTTGGAAGAACCGTTTCAATGTTATCACTAGGCATGTGTAATGGAAGTTGGCGAGTAATGCCTAAAGAAGCTATAGTGACGGGCGCGGAGCATCCGAAGGAGGACCTTGGCCTTGGAGAATCTGCACCTGAAGCATCTTTGGCATGGTCAAGTTTGTTCCCAGGCGGTCCGGCTGCTTACTTTGGTTCATCCAATACAGTCGTAAATCCTATGCCTCTTCACCCCTCCTTAAAAGTAAGAGCTAGAGAGGAGGAAGGTTCTTGTACTGGTTCCAATGGTGAATCAGTCAATGATGTGGAAATTCAGGGCAAGATTCAGGGAAGGTCCTTGGACACCGTCGATTCCAGGTGTCAACAAACATCTCATCAAGAGGAAGTAGTAGTCCCCCAGAAGTCTCCAAGGGGTTTTGTACCATACAAAAGATGTTTAGCTGAAAGAGATGCAAGTTCTTTGATTGTTGCATTGGAAGAAAGGAAGGGGCAAAGAGCTAGGGTGTGCTCATAG 1387 0.4578 LVGLVPVKLRVFTRTGSDFAPMEMQDQIEGTKLSKSGTASDFHSNDGSQSQSPDISSVGNNHAPKVRKPYTITKQREKWTEEEHEKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESSIHPIDIPPPRPKRKPLHPYPRKLANSFKRHSRPNEPEKSPSPNLSSAEKDSQSPTSVLSAFGSEAFGSAFSEHTNRCLSPNSCTTDIQSINLSPIEKENDCMTSKPSKEEDKTPLASAALSISSQPYLHMKSEKLELCSKQTKCINNDVVNVLPTTIKLFGRTVSMLSLGMCNGSWRVMPKEAIVTGAEHPKEDLGLGESAPEASLAWSSLFPGGPAAYFGSSNTVVNPMPLHPSLKVRAREEEGSCTGSNGESVNDVEIQGKIQGRSLDTVDSRCQQTSHQEEVVVPQKSPRGFVPYKRCLAERDASSLIVALEERKGQRARVCS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02707 461 ProSiteProfiles SANT domain profile. 74 125 IPR017884 -
Aip05g02707 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Aip05g02707 461 PANTHER PROTEIN REVEILLE 7-RELATED 23 449 - -
Aip05g02707 461 SMART sant 75 123 IPR001005 -
Aip05g02707 461 SUPERFAMILY Homeodomain-like 70 124 IPR009057 -
Aip05g02707 461 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Aip05g02707 461 MobiDBLite consensus disorder prediction 31 79 - -
Aip05g02707 461 MobiDBLite consensus disorder prediction 172 191 - -
Aip05g02707 461 MobiDBLite consensus disorder prediction 229 249 - -
Aip05g02707 461 MobiDBLite consensus disorder prediction 31 59 - -
Aip05g02707 461 Gene3D - 78 125 - -
Aip05g02707 461 CDD SANT 78 121 IPR001005 -
Aip05g02707 461 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Aip05g02707 461 PANTHER SWI/SNF COMPLEX-RELATED 23 449 - -
Aip05g02707 461 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 74 123 IPR006447 GO:0003677
Aip05g02707 461 MobiDBLite consensus disorder prediction 127 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02707 Aip-Chr5 125957411 125960350 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip05g02707 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02707 - - vun:114181885 499.59