Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02706 ATGGCTAATATTGCTAACAGCATCGTCTTTGGTGCACAACTTCCTCAATCTCCGTTTCCATCATTACCCGTTTCAAATTCTCTCATTTTCACCCAAAAACGCAAACTTTATCATAATTGCTCCAAAACCAACCGCATAACAATCCCTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCGTTCAGCAGCAAGTGTTGTTGCTATGTGTTGGCGTGTCTCCCTCAACCACATGCTTCTGATTCATCATCATCATCAACTTCTTCTAATTCCAATAGCAAACCAAGTTCTTCTTCTGCTGCTCCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAAAGCTTGCGAAATGCATTTATGAATTTTGGTCAAGTTTTAGAAGTGAATTTGGTGATGGATAAAATTGCAAATAGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCTGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG 591 0.3959 MANIANSIVFGAQLPQSPFPSLPVSNSLIFTQKRKLYHNCSKTNRITIPFPSSSSSSSSSSPFSSKCCCYVLACLPQPHASDSSSSSTSSNSNSKPSSSSAAPPSTKLYVSGLSFRTTEESLRNAFMNFGQVLEVNLVMDKIANRPRGFAFLRYATEQESLKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02706 196 SMART rrm1_1 107 180 IPR000504 GO:0003723
Aip05g02706 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 177 IPR000504 GO:0003723
Aip05g02706 196 Gene3D - 76 196 IPR012677 -
Aip05g02706 196 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 51 194 - -
Aip05g02706 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Aip05g02706 196 MobiDBLite consensus disorder prediction 82 105 - -
Aip05g02706 196 PANTHER NUCLEOLAR PROTEIN 8 51 194 - -
Aip05g02706 196 SUPERFAMILY RNA-binding domain, RBD 95 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02706 Aip-Chr5 125953344 125956377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02706 106 196 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.56e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02706 - K13195 ahf:112802436 326.635