Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02686 ATGCTATCATCAAATGCACAATCATCCCATGAACTCAAGTATTCTAGTTTCCGGAGGATCCTATCAAGGAGACGAAGCGCATCCATGTACATTCCCATGGTGTCTATGGAGCCATATTACAACAGAGAACCAAGTCTTGGAGAGCATAGTCGTCGTCAACTTAACAGCGTTAGAACCTTCCCGCCCAAGATTGATGAACTATATGCCACCCTTGGAACCCAAAATATTTTCAAACAGAGTGGAGTTACTGTGACTGAAAACAGTGAAAACAACTGGGACGACAACTATGATTGGGAACACACACCACCCGCAGTGAGCGTTGGGCAACAGGGATTGATTTGTAATAATTATTTTTGTATTAGGGTCGGTACTCATGATAATGCTCACCAAGGAATTCCAAGAACTCCCAGTAGATTTGATCAAGAGTACCACGATGACATTCATGGTGATGAAGAGGGTTTTGTCAAAAAAGTGTTATCATTCATCTCTTCATGTATTCCTAAAGTTATAAGCCCACACTCAAAACGCGTCAAGCAATGGAACAAGATTATAGCTATCTTTTGCTTGGTGGCAATATTTCTCAATCCATTATTTTTCTTCATACCGTATGTACAAAAGGATTTCAATTGCATTGTTATCAACTGGACAAGGACAATACCACTTGTTGTACTTAGAAGCTTGAATGATTTAGTGTATTTCTTGAATATACTTCTTCAGTTTAGGTTGGCTTATGTTTCTGCTAGTACTGGATCAAGGGTGATTGATATAGTTGACCATCCAAAAGAGATTGCTATGCATTATTTGCATAGCTATTTTCTTCTTGATTTATTTGTAGTGATTCCTTTGCCTCAGATAATAATATTGTTTGTGCTACCAAAGTACTTGGGTTCATCAGGAGCAAATCATTCAAAGAATCTTATATCTGCAGTGATCCTTGTGCAATACATTATGCTCTCTGGCCATATTGTTGGCTCTTGTTGGTATCTCTTTGGACTTCAGAGAGTTAATCAATGTTTGCTAGACGCTTGCCATAATGCTAAGATCATTGGTTGCATGAAATATGTGGATTGTGGAAAAGGACATTCCTCTCACCAGACACAAGATTTGTGGACAAACAACGTAAATGCCACATCTTGTTTGAATTCGTTGTCTGGGGCTTTTGATTATGGGATCTATGCCGATGTTGTTCGACTTACTACAGGAAGCAACTTGATCAAAAAATATTTGTATGCACTTTTTTGGGGCTTCCAGCAAATCAGTACTCTTGCTGGTAATCTAACCCCAAGTGATTTTGAGTTGGAAGTCCTTTTCACAATGATAATCATAGGATTGGGGCTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTCCAAAGTCTCGGACAAAGAACACTAGAAATGCAACTTAGAAGCCGTGAAGTTGAGCAATGGATGAACCAGTTTCACTTATCAGAAGATCTAAGAAAGAGGATCAGACATGCCGAAAGGTATAATTGGGTGGCAACAATAGGGATGAATGCACAAATGCTTATGGAAAATATGCCAGAAGATCTACAGAGAGACATAAGACGTCATCTCTTCGAATTTATTAAGAAAATTCGAATTTTCAGCTTAATGGATGAGCCTATTTTAGACGCCATTTGTGAGAGGCTTAGGCAAAAAGTATACTTCAAAGGAAGTACTATTTTGCATCCTGGTGATTTGGTAGAGAAAATGTTCTTTGTTTTGCGTGGGGAATTAAAGAGCATTGGCGAAGATGGAACTAGAGTTTTTTTAACCGAAAGGGATGCTTGTGGTGAAGAACTTCTAATATGGTGTCTTGAAAATTCTTCAGTTAGCACAGATGGTAAAAAGGCATGGCTTCCTGGACCAAGATTACTTAGCAGAAGGACAGTAACGTGTTTAACGAATGTGGAGGTATATTCAATTGGAGCTGCTGACCTAGAAGCAATTACAATCCGTTTCACAAGATTCTTGCGAAATCCACCTGTTCAAAGAGCATTGAGATTTGAATCACCTTATTTGAGATCCGTTGCAGCAACACGGATTCAAGTTGCATGGAGAAAATACAGGGAAAGACAACTAAAACGTGCTCTCTCACAAGCAAATTATTATTAG 2127 0.3879 MLSSNAQSSHELKYSSFRRILSRRRSASMYIPMVSMEPYYNREPSLGEHSRRQLNSVRTFPPKIDELYATLGTQNIFKQSGVTVTENSENNWDDNYDWEHTPPAVSVGQQGLICNNYFCIRVGTHDNAHQGIPRTPSRFDQEYHDDIHGDEEGFVKKVLSFISSCIPKVISPHSKRVKQWNKIIAIFCLVAIFLNPLFFFIPYVQKDFNCIVINWTRTIPLVVLRSLNDLVYFLNILLQFRLAYVSASTGSRVIDIVDHPKEIAMHYLHSYFLLDLFVVIPLPQIIILFVLPKYLGSSGANHSKNLISAVILVQYIMLSGHIVGSCWYLFGLQRVNQCLLDACHNAKIIGCMKYVDCGKGHSSHQTQDLWTNNVNATSCLNSLSGAFDYGIYADVVRLTTGSNLIKKYLYALFWGFQQISTLAGNLTPSDFELEVLFTMIIIGLGLLLFALLIGNIQNFLQSLGQRTLEMQLRSREVEQWMNQFHLSEDLRKRIRHAERYNWVATIGMNAQMLMENMPEDLQRDIRRHLFEFIKKIRIFSLMDEPILDAICERLRQKVYFKGSTILHPGDLVEKMFFVLRGELKSIGEDGTRVFLTERDACGEELLIWCLENSSVSTDGKKAWLPGPRLLSRRTVTCLTNVEVYSIGAADLEAITIRFTRFLRNPPVQRALRFESPYLRSVAATRIQVAWRKYRERQLKRALSQANYY 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02686 708 Gene3D Helix hairpin bin 466 530 - -
Aip05g02686 708 SMART cnmp_10 538 673 IPR000595 -
Aip05g02686 708 Pfam Ion transport protein 182 467 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip05g02686 708 ProSiteProfiles IQ motif profile. 679 707 IPR000048 GO:0005515
Aip05g02686 708 SUPERFAMILY cAMP-binding domain-like 465 662 IPR018490 -
Aip05g02686 708 CDD CAP_ED 538 671 IPR000595 -
Aip05g02686 708 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 317 700 - -
Aip05g02686 708 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 12 316 - -
Aip05g02686 708 ProSiteProfiles cAMP/cGMP binding motif profile. 538 617 IPR000595 -
Aip05g02686 708 SUPERFAMILY Voltage-gated potassium channels 172 466 - -
Aip05g02686 708 Gene3D Jelly Rolls 536 660 IPR014710 -
Aip05g02686 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 317 700 - -
Aip05g02686 708 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02686 Aip-Chr5 125360673 125368050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02686 18 616 Ion Channels AT3G17700 47.086 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02686 K05391 - ccaj:109789004 786.949