Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02681 ATGCATGTGACAAACCACCACCACAACCACCATTTCCTATCTCCATCCACTCAGCCAGCCAGGGATTACGACTCCTACTTACCTCTACTGCCACCGAAAGTGATCACGGCGATGTTCAGTTCTGCTAATCAGCTAGGGCACAAAAGAATCTCTCGTTTTCTCTTTCCCCTTCTTTCTCATTCTCTCGGCCTCCGTTCCGTTTCGTCGCTAAAACGGTTATTGGCCAACAATTGTTCTGAGATGGCTGATGCACACGAGACTGACAAGAACATTGAGATTTGGAAGATCAAGAAATTGATCAAAGCTCTCGAGGCTGCTAGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATATCTCGAGTTACCAAGATGCTTGGTGATGAGTTTGGTACTGCTTCCAACATCAAGAGCAGGGTGAACCGGCAGTCTGTGCTTGGGGCCATCACCTCTGCCCAGCAGAGGCTCAAGCTCTATAACAAGGTTCCTCCAAACGGGCTTGTGCTGTATACTGGCACAATTGTTACTGAAGATGGGAAGGAAAAGAAGGTTACTATTGACTTTGAGCCTTTCAGACCTATCAATGCTTCCCTCTATCTGTGTGACAACAAGTTTCATACTGAGGCTCTAAATGAGCTTTTGGAGTCAGATGACAAGTTTGGGTTCATTGTCATGGATGGCAATGGTACCCTGTTTGGCACCTTGAGCGGTAACACAAGGGAAGTGCTTCATAAATTCAGTGTCGATCTCCCAAAGAAGCATGGAAGAGGAGGGCAATCAGCTCTTCGATTTGCCCGTCTTCGCATGGAGAAACGTCATAACTATGTCAGGAAGACTGCAGAGCTTGCAACTCAGTTTTATATCAATCCAGCTACCAGCCAGCCAAATGTTTCTGGATTAATACTTGCTGGTTCAGCTGATTTCAAAACTGAGCTTAGTCAGTCTGATATGTTTGATCCTCGACTCCAAGCAAAAATTCTCAATGAGAAACGCTTGATTGGAAAATATTTTGAGGAAATTAGCCAGGATACTGGGAAATATGTTTTTGGGGTTGAGGATACTTTGAAAGCTTTGGAGATGGGAGCTGTTGAGACACTCATTGTGTGGGAAAATTTGGATATGAGTAGGTTTGTCTTGAAAAACAGTGCTACTGGTGAGGTTGTCATTCAACACTTCAACAAGGAACAAGAGGCCAATCAGAGCAACTTCCGGGATCCTGTATCCAATGCTGATTATGAGCAATCAATGAACAACTTCCTCTTGCTGGTGCAGGAAAAGGAGGTGAAAATACCTGCACCAGTAATTGAGGGGGTAGCGTGCGCTCCTGCTGCACCTACTCTTCATCCTCCACCTGTGGTATTGCATGATGCCATGCCTCAAGAGTCCAATGTACTGATCCTGGTTACTCATCTATTTGATCTCCTGCTCCTCCATGCCAGCAAACTTGCTTGCCTCCTTAGCTCATCTGCTCTCTACATGTGCGCAACAATGCAATCTCTAACTTGTGCTTCCAAAAGAAACAACCTTGGCTCCATGCTGGCTTCATCATATCCGACTATGGTCTCTGAGCAAAGCAGTGATTGTCCTTCTACTTTCTGGCTAGTTTATTTTCAGGTTATGCTTCCAAGGCGAGTCATTTTAAATGCCAGCTCTTGGGAATTGCTTCCAAGTCGAGCCATTGTAGTTATGTTCATTTCTATTTCTATCCGCAATCTTCAATTCCTGGATTTCATTGTCCTTGTCGGTCCTGGCTGGTCAAGATAG 1779 0.4508 MHVTNHHHNHHFLSPSTQPARDYDSYLPLLPPKVITAMFSSANQLGHKRISRFLFPLLSHSLGLRSVSSLKRLLANNCSEMADAHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNEKRLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDMSRFVLKNSATGEVVIQHFNKEQEANQSNFRDPVSNADYEQSMNNFLLLVQEKEVKIPAPVIEGVACAPAAPTLHPPPVVLHDAMPQESNVLILVTHLFDLLLLHASKLACLLSSSALYMCATMQSLTCASKRNNLGSMLASSYPTMVSEQSSDCPSTFWLVYFQVMLPRRVILNASSWELLPSRAIVVMFISISIRNLQFLDFIVLVGPGWSR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02681 592 Pfam eRF1 domain 3 332 395 IPR005142 -
Aip05g02681 592 Pfam eRF1 domain 1 98 218 IPR005140 -
Aip05g02681 592 SUPERFAMILY L30e-like 329 418 IPR029064 -
Aip05g02681 592 SMART eRF1_1_2 84 220 IPR005140 -
Aip05g02681 592 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 92 333 IPR004403 GO:0003747|GO:0006415
Aip05g02681 592 Pfam eRF1 domain 2 224 332 IPR005141 -
Aip05g02681 592 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 86 220 IPR024049 -
Aip05g02681 592 SUPERFAMILY Translational machinery components 222 333 - -
Aip05g02681 592 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 81 333 - -
Aip05g02681 592 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 333 421 - -
Aip05g02681 592 Gene3D - 334 431 IPR029064 -
Aip05g02681 592 Gene3D eRF1 domain 1 77 219 IPR024049 -
Aip05g02681 592 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 81 333 IPR004403 GO:0003747|GO:0006415
Aip05g02681 592 Gene3D eRF1 domain 2 222 261 IPR042226 -
Aip05g02681 592 Gene3D eRF1 domain 2 262 333 IPR042226 -
Aip05g02681 592 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 333 421 IPR004403 GO:0003747|GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02681 Aip-Chr5 125193450 125199194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02681 81 416 Eukaryotic Initiation Factors Gene Family AT5G47880 83.607 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02681 K03265 - gmx:100785916 619.387