Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02678 ATGGATGAGGCCGACCCTAACCGACCGAAGCGGTGCGGGCTCTGCAGACAGCCTGGGCACACGCGTAGTATCCCGGGAGAATCAAAGGAATTCTATGCTGGTTATAGTAGAGTAAAAGGTTTTACTATTCGGAAGAGTAAAAGGGTAAAAAATACCAAAGGAGAGGTGGTTAGATATAATTTTGTGTGCAGCAGGGATGGGTTCAGGCACAAGAAGTGGTTGGAGAAGTTCGATAGAAAGCGGGAGCACAAGCTCATTACTAGGTGCGGACGTCTAGCAGAGATGAGGATCAAGCGGAATACTGCTAATGAGAGGTGGTGCGTTGAAAGATTTCTCAATGATCACAATCAAACTTTACTCGCCGAGAGATTCGTTGCTGAATTTGAGATGCAGTGGGAGGCGATGATTGACGAATGCGGTGTTAGAAAAGTTGAGTGGGTAAGGGACCTATATAGAAAGAAGTTGTCTTGGTCCATCGCCTACATCAGGGGCAAATTCTTTGCTAACATAAGGACAACATCTCAATGCGAATCACTTCATGCTAAGTTAGGGAACTTCATGGAGAGTAGATATGGAATGTTGGATTTTAAGACCAATTTTTAG 603 0.4478 MDEADPNRPKRCGLCRQPGHTRSIPGESKEFYAGYSRVKGFTIRKSKRVKNTKGEVVRYNFVCSRDGFRHKKWLEKFDRKREHKLITRCGRLAEMRIKRNTANERWCVERFLNDHNQTLLAERFVAEFEMQWEAMIDECGVRKVEWVRDLYRKKLSWSIAYIRGKFFANIRTTSQCESLHAKLGNFMESRYGMLDFKTNF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02678 200 Pfam FAR1 DNA-binding domain 30 120 IPR004330 -
Aip05g02678 200 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 27 122 - -
Aip05g02678 200 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 127 193 - -
Aip05g02678 200 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 127 193 IPR031052 GO:0006355
Aip05g02678 200 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 122 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02678 Aip-Chr5 125136938 125142415 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g02678 FAR1 3.9e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02678 - - ahf:112778035 160.614