Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02627 ATGCCTTCAGTATCAACATCTTTAGCACTTGCTGCTACTCTTGGAATTGCTGAAACTGTGCTTTTTTCCCTTGGTTTTGGCATCATTATGAACATCATGGGTATACCTGCTATATGTCAACCTTGGGAAATTGTAGTGCAGTTCAATGCTGATATTGCTGATGGCATGCCATGGAAGTTTATTCCTACTCAGAGAGGTTTTTCTTTACTTAACACCTTACTGCATGTAAGAGTCAAGCCTGGAGAATGTGCCCTTACATTTTATACAATTGAAAACAAAAGTTCCACTCTAATAACTGGTGTTTCTACATATAATGTCACTCCTATGAAGCTTCCATCAATTGAAGTTGTTACAAATTCACCACCAACTGAACGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTACAGAAGCTGTTGAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGATTGTAATTGCAGGGACGAGACTTGCCTTAGAACAAAAACGAATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTGGAGAATACTGCTGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTGTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCAGAAAGATATTTTAAATACAGAGTTTATATTTTGA 717 0.4031 MPSVSTSLALAATLGIAETVLFSLGFGIIMNIMGIPAICQPWEIVVQFNADIADGMPWKFIPTQRGFSLLNTLLHVRVKPGECALTFYTIENKSSTLITGVSTYNVTPMKLPSIEVVTNSPPTERDHRRPPIHVLVICPTRELASQAATEAVELLKYHPTIGVQIVIAGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFQKDILNTEFIF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02627 238 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 31 111 231 - -
Aip05g02627 238 PANTHER RNA HELICASE 111 231 - -
Aip05g02627 238 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 238 IPR014001 -
Aip05g02627 238 Gene3D - 113 234 IPR027417 -
Aip05g02627 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 232 IPR027417 -
Aip05g02627 238 Pfam DEAD/DEAH box helicase 112 231 IPR011545 GO:0003676|GO:0005524
Aip05g02627 238 Pfam Cytochrome c oxidase assembly protein CtaG/Cox11 43 110 IPR007533 GO:0005507
Aip05g02627 238 Gene3D Ctag/Cox11 38 112 IPR023471 -
Aip05g02627 238 SUPERFAMILY Ctag/Cox11 42 111 IPR023471 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02627 Aip-Chr5 123661622 123663856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02627 133 233 Eukaryotic Initiation Factors Gene Family AT3G13920 33.663 2.35e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02627 - - aip:107642040 458.759