Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02625 ATGGAATCTGGTGGGAGGCTTTTCTTTGATCCATCTGCTTGTAGGGGGAACAACAACATGCTCTTCCTTGGCACTACTGCTGATCTCGCTTTTCGAGGAAGGTCGATCCTGAGCATGGATGAAAGCTCAAAGAGGCGACCTTTCTTCAGCTCACCGGATGATCTGTTTGATGATGAGTACTATGAGGAGCAGCTGCCAGAGAAGAAGCGCCGCCTCACTTCCGAACAGGTCAATCTGTTGGAGAAAAGCTTCGAGGAAGAGAACAAGCTGGAGCCAGAGAGGAAAACCCAGCTGGCGAAGAAGCTGGGGTTGCAGCCGAGGCAGGTGGCAGTGTGGTTCCAGAACCGCAGGGCTCGGTGGAAGACCAAGCAACTTGAAAGGGATTACGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAAAAGCTCAAATCTGAGGTGGTATCCTTGAATGAAAAGCTTCAATTGCAAGCTAAAGATATGCCGGGGGAGCCGATATCGGACAACAAAGCCGAACCGCTTCCAGTTGAGATAGCTCAAATCATCAGCATGAAGGTTGAGGATCGGCTGAGCACCGGGAGTGTTGGAAGCGCCGTGGTTGATGAGGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTATCTTCTCAGATGTTTTTGTTGCTGCTGAAGCTGAGCAACAGAACCAAGAAGAAGGGGAGGATGTCATGTCAGATGCTCAAATGAACAAATCCAAGCAAATTCGCATACTGTCCAAGGATACGATTACTTTTGCCTGGTTTTGA 813 0.4895 MESGGRLFFDPSACRGNNNMLFLGTTADLAFRGRSILSMDESSKRRPFFSSPDDLFDDEYYEEQLPEKKRRLTSEQVNLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSTYDSIVKENEKLKSEVVSLNEKLQLQAKDMPGEPISDNKAEPLPVEIAQIISMKVEDRLSTGSVGSAVVDEEEEDGSDDGRSIFSDVFVAAEAEQQNQEEGEDVMSDAQMNKSKQIRILSKDTITFAWF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02625 270 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Aip05g02625 270 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Aip05g02625 270 Coils Coil 143 170 - -
Aip05g02625 270 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Aip05g02625 270 CDD homeodomain 68 124 IPR001356 GO:0003677
Aip05g02625 270 Gene3D - 61 130 - -
Aip05g02625 270 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Aip05g02625 270 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Aip05g02625 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 234 IPR045224 GO:0003700
Aip05g02625 270 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Aip05g02625 270 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Aip05g02625 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 2 234 - -
Aip05g02625 270 SMART HOX_1 66 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02625 Aip-Chr5 123613813 123616603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02625 1 240 Homeobox Transcription Factor Family AT3G01470 57.678 2.62e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g02625 Homeodomain 5.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02625 K09338 - gmx:100813420 313.923