Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02608 ATGATTTACGCTCGTTTTGTTGTCTGGTCGTGTTGCCGTTATTGTCTTACCGCTTATTCTGGGCGGGCTTATTTCTTGTGCCCGTCTCGCCGTTTTTACGTTGGCAATGGTTCGGACCGATTTGGTCGCGTCGTCACCGAATTGGTTAAGGCTTACGACCCGTCTGGCTCCCGGGGTGATCAATCCCGGGGTGCCGTTTTAGCCCTCGCCTGTAGCAGCTCTCGCCATCGAAGGTCTGTGCATCTCCTTGCATCGCCAGAAGGTTGTTTCGGAGTTGCTGGTCGCGATGCCGTCTCTTCCCTCTTTGTCAAGCCCAGACCTGTCTTCGTCGTCATCGTCGTCGGTTTGTACCTGCTGCTGGCTCGTCTTCTCGTCTCTGAGGCGCGAAACAAATCTCCAATCGTGAATCCTTGCCACCGTGTAGCACCGCCCGTCAGTACCAGTTGCGTGGTGCTTCCCCCTGCTAGTGGATCCACCGCCGATCTGCTCTCTCCTCTTTCTGGTCCTGATCCTAGGAAAAGTCAGGTAAATAAGTTAATTTGTATTACAACAGCAGCGTCACCAAGTAGTAGACAAGGTGAGGAAGTAGTTCCCTCTGATCTATGGGCTTGGAGAAAATACGGTCAAAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCACAAAGGGTTGCCCTACAAGGAAACAAGTGGAGAGAAGCAGAACAGACCCAAACATGTTCAGAATTCGGTCTCTAGGAGCTGCCTGTCGCATTGCCGTCTCTGCCAGCATCGTCATCGTCAGTTCAGGCCTGTTGCTGGCCCGTCTTCTCTTCTCCGGTGCACACCCGTTCCTATGGTGCAAGGTAAATATTCATGTGCTTACTTTTGTATTTATCTATGTCTGA 903 0.5138 MIYARFVVWSCCRYCLTAYSGRAYFLCPSRRFYVGNGSDRFGRVVTELVKAYDPSGSRGDQSRGAVLALACSSSRHRRSVHLLASPEGCFGVAGRDAVSSLFVKPRPVFVVIVVGLYLLLARLLVSEARNKSPIVNPCHRVAPPVSTSCVVLPPASGSTADLLSPLSGPDPRKSQVNKLICITTAASPSSRQGEEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPTRKQVERSRTDPNMFRIRSLGAACRIAVSASIVIVSSGLLLARLLFSGAHPFLWCKVNIHVLTFVFIYV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02608 300 SUPERFAMILY WRKY DNA-binding domain 196 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip05g02608 300 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 163 248 - -
Aip05g02608 300 SMART WRKY_cls 198 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02608 300 ProSiteProfiles WRKY domain profile. 193 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02608 300 Pfam WRKY DNA -binding domain 200 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip05g02608 300 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 163 248 IPR044810 GO:0003700
Aip05g02608 300 Gene3D WRKY domain 173 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02608 Aip-Chr5 123123557 123135341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02608 172 248 WRKY Transcription Factor Family AT2G34830 76.623 6.24e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip05g02608 WRKY 3e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02608 - - aip:107634728 145.206