Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02578 ATGGCAAAGGTGTACAACTTGTTCCTTTCTTTGTGTTTGGCTGCCATGATACCAGCCTTCCAAGCCAATATCTTTGAGAATACTACATATGCGAAACAACATATCAACTTGGTTGATAATCAATACTGGAAAGAAAGGGCAATAATTGCTAGGAAGCTTAGCGAAGAAGCATATTTTCCTGATCCACATGCACTTTCTAGAAACTTCTCATCTATTATTACTGAAGACATAGGTGGTAGCAAGCATGTAAGAAGGAACTTGAATGGTCAAAGGGCAGGAGTTACATGTGAGGCAACCAATAACATTGACAGATGTTGGAGGTGTGACCCCAATTGGGCAGATAATCGCCAAAAACTTGTAAATTGTGTTCAAGGTTTTGGAAGAAATACTACTGGAGGAAAGGGAGGTCCAATCTACATTGTTACTAGTCCTGCTGACAATGACATGGTTAATCCAAAACCAGGTACCCTTCGCCATGCAGTCACAAGAGATGGACCTTTGTGGATTATCTTTGCTCATAGCATGAATATTAGACTCAACCAAGAGCTCATGGTGTCTAGTAACAAGACCATCGACGGAAGAGGAGTTGATATCTACATTACTAAGGGTGCAGGCATCACCCTCCAATACGTCAATAATGTCATCATCCATGGAATCAAGATTCATGATATTGTTCCGGGCACCGGTGGACTTATTAGAGATTCTGAGAGTCATTTTGGATTTAGGACACGCAGTGATGGTGATGGAATCTCCATCTTTGGTGCCAGTAATATTTGGATTGACCATGTTTCCATGAGAAAATGCTCTGATGGTCTTATTGACGCCATTATGGGATCCACGGCTATTACCATCTCTAATAGTCATTTCACAGACCATAATGATGTGATGCTCTTTGGTGCCAATGACCAACACACAATTGATAAGGTGATGCAAATCACCCTAGTTTTCAACCACTTTGGCAAGAGATTAATCCAAAGAATGCCAAGGTGCAGATTTGGATTTGTTCATGTTGTCAACAACGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGTAAGCCTACAATTATTAGTGAAGGAAATCGGTTCGTGGCTCCTGATAATAACAATGCTAAAGAGGTCACGAAGAGGGTAACCAATGATGATTGGAAGAATTGGCAATGGAGATCAATCAACGATGCGTTTGTTAATGGAGCATTTTTCGTACAATCTGGACCTGAACTAGTAAACAGGCCATTCTCAAGCAAGGACATGATTGCAGGAAAAGATGGTTCATACGTGCAAAGACTGACTTCCTTTGCTGGCTCTCTTAAATGTAGAGTTGGTAAACCTTGCTAG 1344 0.41 MAKVYNLFLSLCLAAMIPAFQANIFENTTYAKQHINLVDNQYWKERAIIARKLSEEAYFPDPHALSRNFSSIITEDIGGSKHVRRNLNGQRAGVTCEATNNIDRCWRCDPNWADNRQKLVNCVQGFGRNTTGGKGGPIYIVTSPADNDMVNPKPGTLRHAVTRDGPLWIIFAHSMNIRLNQELMVSSNKTIDGRGVDIYITKGAGITLQYVNNVIIHGIKIHDIVPGTGGLIRDSESHFGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGLIDAIMGSTAITISNSHFTDHNDVMLFGANDQHTIDKVMQITLVFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSSKPTIISEGNRFVAPDNNNAKEVTKRVTNDDWKNWQWRSINDAFVNGAFFVQSGPELVNRPFSSKDMIAGKDGSYVQRLTSFAGSLKCRVGKPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02578 447 PANTHER PECTATE LYASE 18-RELATED 7 447 IPR045032 GO:0030570
Aip05g02578 447 Pfam Pectate lyase 182 365 IPR002022 -
Aip05g02578 447 PANTHER PECTATE LYASE 7 447 - -
Aip05g02578 447 Gene3D - 99 440 IPR012334 -
Aip05g02578 447 SUPERFAMILY Pectin lyase-like 100 438 IPR011050 -
Aip05g02578 447 SMART amb_all 174 371 IPR002022 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Aip05g02578 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Aip05g02578 447 Pfam Pectate lyase, N terminus 41 87 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02578 Aip-Chr5 122040378 122064645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02578 7 447 Polysaccharide Lyase AT1G14420 57.205 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02578 K01728 - gmx:100810857 644.425