Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02540 ATGGAGTTCAAGCGTATGTTCAACCTTGAAAGTGAAGGCTCAGATGGGGGTAGTTCTGATGATTTTTGCGGACACTATTGTGCGAGTGACGACGAATATGATGACGAAGAGGGCTTTGAGTCCCGGGGGGGTTCTGACAGTGGGGAAAAAGGTGAAGGGGATGCTGTTGATGGTAAGGGGTCGAGCGGTGCAAAAAACCCGGGAAATGGTGGCCCGAGAGGGCAACCTGCCGCGGATGACTTCTTGGGTAGAAAATTTGCCACGGAGGAGGATGCTTATGCTGCCTACAAGAAGTTCGCCAGATTCAAGGGTTTTGGAGTTCGGAAGGGAGATGTAGCTTGTGTTAATGGGGTTTTGATAAGGAGAGACTTTTTCTGCCATCGACAAGGCACAAGACATCCTAAGCACTATGACCGTCCGGAGCGAGTAAGGGAGGAGAGACTAGAGAGTCGAACGGATTGTAAGGCAAAGTTGAAGATTTACTACGATGTACAGCATAGCGTGTGGATGGTAAGAACCATCTTCGATGAACACATCCACGATCTTGCCCCAGTGACATTTACACATCTCCTTCCTAGTCACCGGAAGATGAGTGACGGCGACAAGGCACAAGTGGAGAGTTTGAAGCAGTTTGGGATCCCGACTTCGAAGATAATGGCGTACATGGCCGGGCAGTCTGGTGGGTATGGCATGCTTAGATTTACAAAACAGGATTTGTATAATTATGTGCATGGGCAATGGGTTGCGCGAATATGTGATGGTGATGTAGCAGCAACCATCAGTTACTTGGAAGGTAAGGCAAATGCCGACATGATAACAGCTGCACGGTACACACGGACCGCAGACAACCATTTGGCTAGCTTATTTTGGGCCGATGGTGAGATGATGTCAGATTATCAATTATTTGGGGATGTGTTGGCATTTAATTCCACCTACCGCTCTAACAAGTACAGGAAGCCACTGGTGGTTTTCTCCGGGTCAAATCATCACAAACAAACATCGATTTTTGGGTTCACGTTGCTTGAGGATGAAAAGGTTCGCACATACAGGTGGGTGTTGTTGAACCTTTTGGATGTAATGGGACAAAAGAAGCCGTGTGTGGTGGTCACAGATGGGGACAAGGTGATGCGCATGGCAATTGTAGAGTCTGGACTGGTTGTTAAGGACTACCAAAATAATGAAGTTATGGCCCAATTCTATTCCACGTATTATAGTCCAGTGCTAACCACTGGCCTAGAAGCAATGGAGCTGTTTGCATCAAAGGTGTATACACAGGCAGTGTTTAAAGAAGTTAAGAAACAAATTAAGGGCGTGGCGACATTATTGTTTCGGGGCAGGGACAGCATTAGCACAACATGTGTGTACAGGTTTTCGAGGATGGGAAAACCGGACAAAACACACAAGGTGTTGTATGATCTGAACGAGGAAAAAATTGAGTGTGAGTGTTCAATGTGGAACAGTGAAGGGATTCCTTGTTCTCATATCTTCTGTGTGATGAAGTACGAGGGATTGGAGAGAATACCGCATGGTCTTGTTCTACGTAGGTGGTGCAAAGATGCAAAGGATTGCAGATCGAAACCGTTGGAAGTTGCAGAAGGGCATCATGGACGGCTGCTTAGACATGGTGCCTTTTGTGGGGCGATGAGTTTGGTTGCCAAACTTGGGTCGGAAGATGCTGCAGATTTTGTTATTGCTAGGAACGGCCTTGCTAACCTCGCTAAAGCACTTCAACACAGAGTGTATGACAGGGTCGAAAGCCAGCTTGGCGTATCATCGCAGGACGGGATCAAGGACCCAGAGGTGTCGAAGACAAAGGGAGCTCCGAAGAAGGGCAACGAACCCGAACCTGGTAGCCAGGGTGAGGATCGGAGTAAGCGGAGACGCTGCACAAACTGTGGCACTCCTGGGCACACTAAGAGGACATGCACTTAG 1932 0.4803 MEFKRMFNLESEGSDGGSSDDFCGHYCASDDEYDDEEGFESRGGSDSGEKGEGDAVDGKGSSGAKNPGNGGPRGQPAADDFLGRKFATEEDAYAAYKKFARFKGFGVRKGDVACVNGVLIRRDFFCHRQGTRHPKHYDRPERVREERLESRTDCKAKLKIYYDVQHSVWMVRTIFDEHIHDLAPVTFTHLLPSHRKMSDGDKAQVESLKQFGIPTSKIMAYMAGQSGGYGMLRFTKQDLYNYVHGQWVARICDGDVAATISYLEGKANADMITAARYTRTADNHLASLFWADGEMMSDYQLFGDVLAFNSTYRSNKYRKPLVVFSGSNHHKQTSIFGFTLLEDEKVRTYRWVLLNLLDVMGQKKPCVVVTDGDKVMRMAIVESGLVVKDYQNNEVMAQFYSTYYSPVLTTGLEAMELFASKVYTQAVFKEVKKQIKGVATLLFRGRDSISTTCVYRFSRMGKPDKTHKVLYDLNEEKIECECSMWNSEGIPCSHIFCVMKYEGLERIPHGLVLRRWCKDAKDCRSKPLEVAEGHHGRLLRHGAFCGAMSLVAKLGSEDAADFVIARNGLANLAKALQHRVYDRVESQLGVSSQDGIKDPEVSKTKGAPKKGNEPEPGSQGEDRSKRRRCTNCGTPGHTKRTCT 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02540 643 MobiDBLite consensus disorder prediction 588 643 - -
Aip05g02540 643 MobiDBLite consensus disorder prediction 40 56 - -
Aip05g02540 643 Pfam SWIM zinc finger 468 495 IPR007527 GO:0008270
Aip05g02540 643 ProSiteProfiles Zinc finger CCHC-type profile. 627 642 IPR001878 GO:0003676|GO:0008270
Aip05g02540 643 MobiDBLite consensus disorder prediction 1 79 - -
Aip05g02540 643 SMART 26again6 478 505 IPR006564 GO:0008270
Aip05g02540 643 Pfam FAR1 DNA-binding domain 96 183 IPR004330 -
Aip05g02540 643 MobiDBLite consensus disorder prediction 598 629 - -
Aip05g02540 643 PANTHER OS02G0262500 PROTEIN 80 380 - -
Aip05g02540 643 Pfam MULE transposase domain 305 381 IPR018289 -
Aip05g02540 643 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 80 380 IPR031052 GO:0006355
Aip05g02540 643 ProSiteProfiles Zinc finger SWIM-type profile. 467 503 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02540 Aip-Chr5 120711400 120713675 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g02540 FAR1 3.2e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02540 - - aip:107633461 670.233