Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02514 ATGAGATCTGTCCCCTGCATGGCAGCAGCTGCAACACACCCCCGTGGTACAGGCACATCGGGATTCCGCAACGCCAGCTCCACCACGCCCCTGCGTGGTGCCAAATCCTTGCATGTCCGCCGCGTTACCATGCCCCCGGCGTGCTGCTGGGGTGCTGACATGCTGCTGAGGAGCAGGGACACCACGTCCCTACGTATTGACCGAAAGCTCCACCGTCCGGCCACGCGCCAAGTCTCCCTCCTCCTCATCTTCCTCCAAGACCTCCACGCTTCCCTCCTCCCAAACGACGCCGTTCCCTCCCTCTCCGACCTCCACTTCTCCTTCCAGAATCTTCACTTCCTCTTACAAGATTGCTCCCGCGAAGGTGCCCGCCTCTTCATGCTCCTCAAGTCCCGCCACGTGGCATCCCAATTACGGTCACTCTTTCGCACTATCGCTGCCACCCTCGACGCGCTGCCCCTCCACGTCATCAAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTAGGAAGCAAGCCAGGAAAGTCACCTTCGAACTCGATCCGGAAGACCAAACGGAAGCCCAACGAGTTAACTCGGTTTTGCAGCAGTTCGAGAGAGGAATCGAGCCTGATTTAAACGCCATGAAGCGAACCCTCACCTACCTCGAAATCAAGACATGGATCGATTGTAACAGAGAGGTGAAGTTTCTAGAAGACGTGATGCTCTCTTCCGCGTCCTCTGTTTCCGACGAAGAAGAGGTTTCCTTGTTGAGCGGTTTGATTTCGTTCTTGTGTTACTGCAGAGGAGTGATATTCGAAGACGTTGATTTCCCGTCTCTTCATGAAAATTCCCAATCCGAGGGAAGGAGCAGCGGTGGCAGTGAAGAGTTGAGCTGCGAGAAGCGGCCGCCGGAGGATTTCCGGTGTCCGATCTCACTGGAGTTGATGATTGATCCGGTGACTACTTCCACCGGCCAGACTTACGACCGCATCTCGATTCAGAAATGGCTTAAAGCTGGAAACAGAGTGTGTCCCAAATCAGGGGAGAGGCTCACCAACACAGAGTTGGTTCCAAACACGTCACTGAAAAGGCTCATCCAACAATTCTGCGTTGATAATGGCATCTCGGTAGCCAAGCCAAGCAACCGGAGTCACCACCGCACTGGAGTATCAGCCGAGGCTGGTAGTCCAGCAGCGGCGCACGCCGTACAGTTCCTCTGCTGGTTTCTTGCCCGGAAACTCGCCTTTGGAACAGAGGAGCAACAGAACAAGGCTGCTTACGAGGTTCGCCTGCTCGCGAGGTCTAACGTTTTCAACCGGACGTGTTTGGTTGAGGTTGGGACCGTGCCGCCTTTGATTGATCTTCTTAGCACCGGTGACAGAACAGTGCAAGAGAATGCAGTTGCTGCACTGTTGAAGCTCTCGAAGCATAGCAGTGGCCAGCAATGTATAATGGAGAGCAGGGGTTTGGCGCCAATTCTCAAAGTGCTAAATAGAGGGCTTAGTTTGGAAGCTCGCCAAATGGCAGCTGCTACCATATTCTATCTTTGTTCCGTGAAAGAATTTAGGAAAATCATTGGAGATAATCCGGAGGGGATTCCCGGTTTGGTGGAGATGATCAAAGAAGAAAGGAAAACAATCCATTCTTGTTTTGCTGGCAAGGATCGGCTACATAGATCAGAGGATGCTATAATGTGTGGGAAAAAGAATGCTGTGGTTGCGATTTTTGGGCTGCTCTTACATCCCCAGAATCACTCAAAAGTGCTGGCAGCCGGAGCGGTTCCTGCAATTGTTAGAGTGTTATCTTCTTCCTTGGACAAAGCTGGTCTCGTCACGGATTGCCTAGCAGTTCTAGCTGCATTGGCCGAGACAACCGAGGGAGCAAGGGCCGTGTTAGAAGCTGAGGCATTGCACTTGATCATTTGGATCTTGAAGTCCGAAACCTCGCGTGTGGCAAAGGAGCACTGCGTGTCGATTTTGATGTCTCTTTGTGTCCATGGTGGTTCAGGGGTTGTAGCTTTTCTTGTTGCGGAATCTTCAATCATGCCTTTGCTATATTGGATCATCACTGATGGTACCCCTCATGCTGCAAAGAAAGCACGCTCCCTCATCAGAGTTCTACAGGAATTCAATGAACAAAGAACTTCTGGATTGGTTGGGTCCTCATCAGTTTTGCGACAACCATTGATTCATATGAGTTAG 2187 0.5171 MRSVPCMAAAATHPRGTGTSGFRNASSTTPLRGAKSLHVRRVTMPPACCWGADMLLRSRDTTSLRIDRKLHRPATRQVSLLLIFLQDLHASLLPNDAVPSLSDLHFSFQNLHFLLQDCSREGARLFMLLKSRHVASQLRSLFRTIAATLDALPLHVIKVCWEVRELVELVRKQARKVTFELDPEDQTEAQRVNSVLQQFERGIEPDLNAMKRTLTYLEIKTWIDCNREVKFLEDVMLSSASSVSDEEEVSLLSGLISFLCYCRGVIFEDVDFPSLHENSQSEGRSSGGSEELSCEKRPPEDFRCPISLELMIDPVTTSTGQTYDRISIQKWLKAGNRVCPKSGERLTNTELVPNTSLKRLIQQFCVDNGISVAKPSNRSHHRTGVSAEAGSPAAAHAVQFLCWFLARKLAFGTEEQQNKAAYEVRLLARSNVFNRTCLVEVGTVPPLIDLLSTGDRTVQENAVAALLKLSKHSSGQQCIMESRGLAPILKVLNRGLSLEARQMAAATIFYLCSVKEFRKIIGDNPEGIPGLVEMIKEERKTIHSCFAGKDRLHRSEDAIMCGKKNAVVAIFGLLLHPQNHSKVLAAGAVPAIVRVLSSSLDKAGLVTDCLAVLAALAETTEGARAVLEAEALHLIIWILKSETSRVAKEHCVSILMSLCVHGGSGVVAFLVAESSIMPLLYWIITDGTPHAAKKARSLIRVLQEFNEQRTSGLVGSSSVLRQPLIHMS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02514 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 587 631 IPR000225 GO:0005515
Aip05g02514 728 CDD RING-Ubox_PUB 302 344 IPR045210 -
Aip05g02514 728 Gene3D - 379 548 IPR011989 -
Aip05g02514 728 MobiDBLite consensus disorder prediction 277 300 - -
Aip05g02514 728 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Aip05g02514 728 Gene3D - 551 718 IPR011989 -
Aip05g02514 728 PANTHER U BOX DOMAIN-CONTAINING 56 712 - -
Aip05g02514 728 PANTHER OS07G0532750 PROTEIN 56 712 - -
Aip05g02514 728 ProSiteProfiles U-box domain profile. 297 371 IPR003613 GO:0004842|GO:0016567
Aip05g02514 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 372 IPR013083 -
Aip05g02514 728 SUPERFAMILY RING/U-box 293 372 - -
Aip05g02514 728 SMART Ubox_2 301 364 IPR003613 GO:0004842|GO:0016567
Aip05g02514 728 Pfam U-box domain 299 368 IPR003613 GO:0004842|GO:0016567
Aip05g02514 728 Pfam Armadillo/beta-catenin-like repeat 434 470 IPR000225 GO:0005515
Aip05g02514 728 SUPERFAMILY ARM repeat 409 705 IPR016024 -
Aip05g02514 728 SMART arm_5 576 618 IPR000225 GO:0005515
Aip05g02514 728 SMART arm_5 431 471 IPR000225 GO:0005515
Aip05g02514 728 SMART arm_5 472 513 IPR000225 GO:0005515
Aip05g02514 728 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02514 Aip-Chr5 120178426 120182398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02514 97 710 U-box Gene Family AT1G10560 39.095 9.70e-143 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02514 - - aip:107640973 1373.99