Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02484 ATGTCTTCTCCAACACATACACCAACACCAACCATGGATCCCTCTTCACGCCACTACTCGTACAATCGCAAACAGAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATAAGGACAGCATCCACTTGATCGGCCTCGACGATGCAGCTTCTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTCTAGAAAAGCTAAGAATCAGTATACTTGGAAAGGGTTTGCTGCTATTCCTGGGGCTTTACAAGAACTCAAGGACGAGGGTTTGAGGGAGAATCCCTATGGTTTTGATGGTGATAATGAAATTGCAAAATTGTCAGATGACGAGGATGATGAAGAAACAATGTCAAATCCCAGTAATGGAAGTCAGAATGACAAATCAAATCCCGATGCCTCACTTATAAAATCATTGAAGCCTGAAAACAGAAGGGAAAAATCTCTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATCGAAATGATTTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCTTATATGATATTGCAAATGTTTTGTCCTCCATGAATCTAATCGAGAAGACCCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAACCATGGAGTGAGTCAGGTGACTCTGCTCTAAATTCGAATCACAGTGGCGAGTCAAGGAAAAGGATGTTTGGTGAAGACATCACCAACATTAGCTTCAAGAGGAACAAAGTGGATCTGTCTATGAATGCTGAGAATAGCTGCAAGAGTTACTCCAAGATGCAAGACCAACTCGAAAACGACGATGATAGTTGTTGGCAAGCTCACACGGATAAAGGCACCGTGAAACAAGAAGGAAAACAGAATTCAAAGGGCTACCATTTTGGTCCTTTTGCTCCAGAGTATGTTTCCAAGAATGGTGGAGCCTCTGAGAATACTAATGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAATCAAGATTGA 1110 0.4234 MSSPTHTPTPTMDPSSRHYSYNRKQKSLGLLCTNFLKLYNKDSIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALQELKDEGLRENPYGFDGDNEIAKLSDDEDDEETMSNPSNGSQNDKSNPDASLIKSLKPENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDSALNSNHSGESRKRMFGEDITNISFKRNKVDLSMNAENSCKSYSKMQDQLENDDDSCWQAHTDKGTVKQEGKQNSKGYHFGPFAPEYVSKNGGASENTNVKQVHDWESLSNVYRPRYQNQD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02484 369 Gene3D - 153 239 IPR036388 -
Aip05g02484 369 Gene3D - 18 90 IPR036388 -
Aip05g02484 369 PANTHER TRANSCRIPTION FACTOR E2F 16 368 IPR015633 GO:0000978|GO:0006357
Aip05g02484 369 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 16 368 - -
Aip05g02484 369 SUPERFAMILY "Winged helix" DNA-binding domain 159 238 IPR036390 -
Aip05g02484 369 MobiDBLite consensus disorder prediction 105 148 - -
Aip05g02484 369 SMART E2F_TDP_2 157 237 IPR003316 GO:0005667|GO:0006355
Aip05g02484 369 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Aip05g02484 369 SUPERFAMILY "Winged helix" DNA-binding domain 22 86 IPR036390 -
Aip05g02484 369 MobiDBLite consensus disorder prediction 131 146 - -
Aip05g02484 369 Pfam E2F/DP family winged-helix DNA-binding domain 159 237 IPR003316 GO:0005667|GO:0006355
Aip05g02484 369 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02484 Aip-Chr5 119366606 119372744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02484 18 368 E2F-DP Transcription Factor Family AT3G48160 58.989 3.36e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip05g02484 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02484 K09391 - gmx:100818090 474.167