Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02457 ATGCTTGGGTCGAAAACTGGGAGCTACAATGAACCAACAGAGACAAGGGGATGGGCCATTGGTAGAAGTCGCTGGCAGCACCAATGCAACTTGGGAGGTGCCATGGGAGGGGACGACAGGAGTTACCACAGGGCAGGAGTAGGACTTTCCTTAGAGAAATGGGCTCAAGCTTTGAAAGATCTCTGGTCGAAGGTGAAGGAGAAGAAGACAGGATTGGGGTCGGTTTGGGGACGCTTCCGCCACGAGTCCACCGTCACCGACTTGAGGCCCGCCGTAATTGCCACTCGCAAACACCGTAAGAGGAAGAACTCACTCGTCCACGCCGCAGCTGCAGTTGCCTCCGAGGACGACTCCTCCAGGATGGTTTCCACCAGTTCTGCCAACGACTTGCTGACATGTTTTGGTGATCAATGGAGGGTCATTCATTGGGGCGCCTGTTGGCTAAGATGTGGATTCAAAACAATCGGACCTGTAGTATTACTATTTTATCTAGCCGAGAGAGCAAGAAGAGAAAAGATCAATGAGAGGATGAAAATTCTTCAGGATTTGGTCCCAGGGTGTAACAAGGTAATTGGTAAAGCTCTTGTCCTAGATAAAATCATCAATTATATTCAGTCACTACAGCGACAAGTTGAGTTCCTGTCAATGAAGCTTGAGGCAGTTAATTCAAGATTGAGCATGAACCCTACAATTGATGGGTTCTCTTCAAAAGATCACCCATTATAG 726 0.4848 MLGSKTGSYNEPTETRGWAIGRSRWQHQCNLGGAMGGDDRSYHRAGVGLSLEKWAQALKDLWSKVKEKKTGLGSVWGRFRHESTVTDLRPAVIATRKHRKRKNSLVHAAAAVASEDDSSRMVSTSSANDLLTCFGDQWRVIHWGACWLRCGFKTIGPVVLLFYLAERARREKINERMKILQDLVPGCNKVIGKALVLDKIINYIQSLQRQVEFLSMKLEAVNSRLSMNPTIDGFSSKDHPL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02457 241 Gene3D - 163 231 IPR036638 GO:0046983
Aip05g02457 241 PANTHER TRANSCRIPTION FACTOR BPE 164 238 - -
Aip05g02457 241 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 164 238 IPR024097 GO:0006355
Aip05g02457 241 Coils Coil 204 224 - -
Aip05g02457 241 Pfam Helix-loop-helix DNA-binding domain 165 208 IPR011598 GO:0046983
Aip05g02457 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Aip05g02457 241 SMART finulus 163 213 IPR011598 GO:0046983
Aip05g02457 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02457 Aip-Chr5 118660659 118666679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02457 164 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 86.667 2.79e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g02457 HLH 8.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02457 - - qlo:115963610 147.517