Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip05g02449 | ATGTTGAAGGTGAAGGTGTATGCGGACCGCATGTCCCAGCCATTTCGTGCCGTTCTTATCTTCTGCAAAGTTAATGGAATAGAATTCAACGAGATTAAAGTTGAAATCTCCAAAAGACAGCAGTTATCTCCCGAATTTGCAGGTTCAAGCAATTCGAGAGGTGCTGAATTAAGGAGAGAAGAGAGAGAGAATTTTGGAGATGGCTTGCTCTTATTAGGAAGACCCTTAAGCTTGCCTGAAGAGAGCATTATTCTGAATGCTCTTTCTGCTACCGTTGATTTTACTACTTGTGAATCCATAAGAATGTCTCAGTCTGTGGATAAAACTGGTTTGAGAACCTTGGCTGTTGTAACAAAGGCTGATAAGTCTCCTGAAGGCTTGTTGGAGAAGAGGCTAGTTCAAGTTCAAGGCATGATCATATCCAAAACTCTGCCCGAAATTTATGAGAATACAGTTGAGGTTGAGCTTCCTGTTTACGATGCACTTTTGAAGTTCCAAAAAGATAAGCGCCCCGGTGATGATCTTTTTGACAAGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGCCTAACTGCAAAGGTCTTCCGTACATTCAATGCATCTATCACGTTGGATGATATGTTGAATAAGGAAACTAAAGAGGGTGATGTTGTCGAAAAGATTCTTGTTTATCAACATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGCAGTGTTTCAAAATCTCACTCATCACAAATTGAAAAGTTAACAAACAAGATTGGTGAGCTTCAGGCTAGAGAAAAAGATCTCTCAAACCAATGCAAAGATTGA | 834 | 0.3957 | MLKVKVYADRMSQPFRAVLIFCKVNGIEFNEIKVEISKRQQLSPEFAGSSNSRGAELRREERENFGDGLLLLGRPLSLPEESIILNALSATVDFTTCESIRMSQSVDKTGLRTLAVVTKADKSPEGLLEKRLVQVQGMIISKTLPEIYENTVEVELPVYDALLKFQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKEGDVVEKILVYQHANKQVAIICNHQRSVSKSHSSQIEKLTNKIGELQAREKDLSNQCKD | 277 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip05g02449 | 277 | Gene3D | Topoisomerase I; Chain A, domain 3 | 149 | 197 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Aip05g02449 | 277 | Gene3D | Glutaredoxin | 3 | 66 | - | - | |
| Aip05g02449 | 277 | Gene3D | - | 75 | 148 | IPR027417 | - | |
| Aip05g02449 | 277 | Gene3D | - | 198 | 276 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Aip05g02449 | 277 | Coils | Coil | 247 | 277 | - | - | |
| Aip05g02449 | 277 | PANTHER | DNA TOPOISOMERASE I | 148 | 275 | - | - | |
| Aip05g02449 | 277 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 148 | 274 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Aip05g02449 | 277 | SMART | topeu | 70 | 277 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Aip05g02449 | 277 | SUPERFAMILY | DNA breaking-rejoining enzymes | 148 | 265 | IPR011010 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip05g02449 | Aip-Chr5 | 118075056 | 118078378 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip05g02449 | 1 | 46 | Glutathione S-transferase Gene Family | AT5G41210 | 73.913 | 5.20e-19 | 82.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip05g02449 | K03163 | - | gmx:100779575 | 216.468 |