LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g02424	ATGGATAATCATGCCAGCGAACCTGCAAGTTTCTGGACTCAAGCAAACGCTCTCCTCCGGAAGAATTTAACATTCCAGGTCCTTGAGCAAACTCTTCTTCTCTCTTCATATCGAGCCAGATTAATATTTGTTTTTTGTTTCTTGCAGAAGAGGAATGCGAAGACAAACGTGAGGCTAATCATGTTCCCATTCGTGCTGTGCCTGCTGCTGCTGCTTCTCCAGAAGCTGGTGGACAACCAGCTGGACAAGGACAAATACAAGTGTGGTTGCACCTGTACCAAGTCAGAAGATGGCCAGTGCCTTGAGAAAGTGTGTGGTGCTCAGTACTCAGATTTGGACCAAGTTGGTGCTTGTGCCGTTCCCAATCCTCCTGAGTGGCCTCCCGTGCAACAAGTGCCTGCCCCTAATTACAGAGCCGTCTCCGCTGACTTTATTTCCGAGTCCGATCTTCCAAACCCCTCCTGCAGGAGTAACGGCTCTTGTCCTATCACCATGCTCTTCACGGGAAACAACCAATCATTTGGTCAAATTTTGTACAGGAATATGATCCCTAGTAACTTTACTATGAATACATCTAATGTGATGGCTAGTTTGGCCACAGATCTGCTGGGATCAGCATCAAAGACAGAAAACACCAATTTTCTTGAATCCGCTTTCTTTTCAGGCCTTCCTGTTTATTATCTACAAAAGCAATGCACAGAGAACTCTACATTTTCCTTTCCACTCCAGATAGAATCCTATAGTATACAGCAAGAGGTAACATGTGCTCAGGTTTTACCTTTGTGGCGTAATAGTCCTTCTGAAGTGAACAATGAGCTATATAAAGGTTATCGAAAAGGGAACTCCGAGAGACAGATCAATGAGATAGCTGCAGGTTACGATTTTCTAAATTCCAATCACAATATATATAATGTCAGCATATGGTACAACTCAACCTACAAAAATGACACTGGCTTTGATCCTATTGCATTGGCAAGGGTTCCTCGTTCCATAAATCTGGTATCAAATGCCTACCTTCAATTTTTGATGGGTCCTAATACCAAACTGTTGTTTGAGTTTGTGAAGGAAATGCCAAAACCTGAGACCAAGATCAAGTTTGATTTGGCTTCTCTTTTGGGTGTTTATGAGAAGCAACAAAAGTTAAGAATCATGATGAAAATGCATGGTCTTAGTGATGGACCATATTGGATGATTTCATATGGTTATTTTCTTGCACTATCTGTGATCTACATGCTGTGTTTTGTGCTATTTGGTTCAGGCATAGGGTTAAAATTCTTTACAAAGAATGACTACAGCATCCAATTCGTGTTTTACTTCATCTATATAAATTTACAAATTTCGCTGGCATTTCTATTGGCTTCCATGTTTTCAAATGTCAAGACCGCTACAGTAACTGCATACATAGGGGTATTTGGAACTGGGCTGTTAGGTGGTTTTCTCTTCCAGTTTTTTGTCCAGGATACATCATTCCCAAGAGGGTGGATCATTGTTTTGGAATTGTATCCTGGTTTTAGTTTATATCGTGGTCTGTATGAGTTTTCGCAATCTGCCTTCAGTGGGGATAAATTGGAGACTCATGGTATGCGCTGGGGAGATCTAAGCGATAGCACAAATGGCATGAAGGATGTCTTAATTATCATGTTTGTCGAATGGATATTCGTCCTTTTCTTTGCTTATTACATTGATCAAGTTTTTTTGTCTGGAAGTGCAAAAAGTCCCTTCTTTTTCTTGAAAGGGTTTCAGAAAAAGCCACTCTCTTCTTTTCGGAAGCCTAGTTTGGGAAAGCAGGGATCTAAAGTTTTCATTCAGATGGATAAACCTGATGTTAGCCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCAACTATTAATCAAGCAATCGTATGTGACAACCTAAAAAAGGTCTATCCCGGGAGGGATGGTAATCCAGAGAAGTTTGCAGTAAGAGGCTTATCCCTTGCTTTGCCCAACGGGGAATGCTTCGGTATGCTTGGTCCCAATGGTGCTGGGAAGACCTCCTTTATCAATATGATGATCGGCCTCACAAAGCCAACCTCTGGTACAGCATTTGTTCAAGGTCTGGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGTGTCTGTCCACAACATGACTTGCTGTGGGAAACCCTGACAGGAAGAGAACACCTACTCTTTTATGGAAGACTTAAGAATCTTAAGGGTTCAGCCTTAACACAAGCAGTGGAAGAATCATTGAAGAGTGTAAACCTTTTCCACGGAGGAGTTGCTGATAAACATGCTGGAAAATACAGTGGGGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATCGGGGATCCTAGAGTTGTTTACATGGATGAGCCAAGTACTGGATTGGACCCAGCATCAAGAAACAACTTGTGGAATGTTGTTAGGCGCGCGAAACAGGATCGTGCTATCATCCTCACCACACATTCCATGGAAGAGGCAGAGGTCTTATGTGATCGGTTAGGAATATTCGTCGATGGTAGCTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGGGGAACTTATGTGTTCACAATGACAACAACTATGGATCATGAGAAAGATGTGGAGAGCATGGTGCAACAACTCTACCCGGCTGCTAAGAAGGTTTACCACATCTCTGGCACCCAGAAGTTTGAGCTCCCCAAAGAAGAGGTCAGGATAGCTAGTGTGTTCCGAGCCGTCGAAATTGCAAAGCGAAACTTCACAGTCTCTGCATGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATCAAGGTTGCCCATGACGCTCAGGCATTTGAGAAATTGTCTTAA	2856	0.4275	MDNHASEPASFWTQANALLRKNLTFQVLEQTLLLSSYRARLIFVFCFLQKRNAKTNVRLIMFPFVLCLLLLLLQKLVDNQLDKDKYKCGCTCTKSEDGQCLEKVCGAQYSDLDQVGACAVPNPPEWPPVQQVPAPNYRAVSADFISESDLPNPSCRSNGSCPITMLFTGNNQSFGQILYRNMIPSNFTMNTSNVMASLATDLLGSASKTENTNFLESAFFSGLPVYYLQKQCTENSTFSFPLQIESYSIQQEVTCAQVLPLWRNSPSEVNNELYKGYRKGNSERQINEIAAGYDFLNSNHNIYNVSIWYNSTYKNDTGFDPIALARVPRSINLVSNAYLQFLMGPNTKLLFEFVKEMPKPETKIKFDLASLLGVYEKQQKLRIMMKMHGLSDGPYWMISYGYFLALSVIYMLCFVLFGSGIGLKFFTKNDYSIQFVFYFIYINLQISLAFLLASMFSNVKTATVTAYIGVFGTGLLGGFLFQFFVQDTSFPRGWIIVLELYPGFSLYRGLYEFSQSAFSGDKLETHGMRWGDLSDSTNGMKDVLIIMFVEWIFVLFFAYYIDQVFLSGSAKSPFFFLKGFQKKPLSSFRKPSLGKQGSKVFIQMDKPDVSQEREKVEQLLLEPTINQAIVCDNLKKVYPGRDGNPEKFAVRGLSLALPNGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTHMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKHAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRNNLWNVVRRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKARYGGTYVFTMTTTMDHEKDVESMVQQLYPAAKKVYHISGTQKFELPKEEVRIASVFRAVEIAKRNFTVSAWGLADTTLEDVFIKVAHDAQAFEKLS	951

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip05g02424	951	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	629	866	IPR003439	GO:0005524
	Aip05g02424	951	PANTHER	ABC TRANSPORTER A FAMILY PROTEIN	9	951	-	-
	Aip05g02424	951	CDD	ABC_subfamily_A	633	854	-	-
	Aip05g02424	951	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	628	857	IPR027417	-
	Aip05g02424	951	SMART	AAA_5	659	842	IPR003593	-
	Aip05g02424	951	Pfam	ABC transporter	651	795	IPR003439	GO:0005524
	Aip05g02424	951	Gene3D	-	621	895	IPR027417	-
	Aip05g02424	951	PANTHER	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	9	951	IPR026082	GO:0016021\|GO:0055085\|GO:0140359
	Aip05g02424	951	Pfam	ABC-2 family transporter protein	374	558	-	-
	Aip05g02424	951	ProSitePatterns	ABC transporters family signature.	768	782	IPR017871	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g02424	Aip-Chr5	116900498	116909215	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g02424	606	853	Calmodulin-binding Proteins	AT2G36910	22.780	3.51e-12	68.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g02424	-		-	gmx:100805474	1516.52