Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02422 ATGTGGGATTCAATGATCAAGAAGATTCGAGCCAAAAGAGGATTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAAAACAAGAATAAGTGCAAGAATCAAGAAACTACAGGACCTTTTCCCAAAATCGGACGAGCAAACAAGTACTGCAGATATGTTGGATTTGGCAGTTGATTATATCAAAGGCCTTCAGAAAACAAGTCAAGATACTCACAGATACAAGGGCAAAGTGCAACTGTTCAAGTAA 252 0.4008 MWDSMIKKIRAKRGFATHPRSIAERERKTRISARIKKLQDLFPKSDEQTSTADMLDLAVDYIKGLQKTSQDTHRYKGKVQLFK 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02422 83 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 70 - -
Aip05g02422 83 SMART finulus 21 71 IPR011598 GO:0046983
Aip05g02422 83 Pfam Helix-loop-helix DNA-binding domain 20 66 IPR011598 GO:0046983
Aip05g02422 83 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 15 65 IPR011598 GO:0046983
Aip05g02422 83 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 76 IPR036638 GO:0046983
Aip05g02422 83 Gene3D - 16 81 IPR036638 GO:0046983
Aip05g02422 83 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02422 Aip-Chr5 116890744 116895616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02422 3 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 68.056 2.57e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g02422 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02422 - - gmx:100795896 112.079