Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02398 ATGTCATCACAGACAACCGCCAGGGAGGCAGCGGAGCCCCAGGCGCCACTCCTCCGCTCCCGCCACGGGAACTCTGATGCCTCCGCCGCGTCTCGGGCTCCAACCCTCGCGCTTCTGCTGGGCCGAGCCACGGGCCGCCGTGGCCCGTCCATGCTGGTCCGCGAGACTGCAGCGCGGGAGCTGGAGGAGCGGCGGGCCGACTGGGGATACTCGAAGCCGGTCGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTAGTGGTCTCAGCGGTGATGCTTGCGTGCACCTTGGATGAGCGGCCGAACACGCCGATCCGCCTGTGGATCTTCGGGTATGGGCTGCAGTGCCTGCTGCACGTGGTGCTGGTGTGGCTCGAGTACCGGCGCCGGAACCAAAGGAATTCGCGGCGTCAGCGAAGGACGAGTGGCATAGAAAGCGAGGATGCTGATAGCTTTGAGGATGCCAACGATAGTGACGATGATGATGTTGGTGATGGAAACTCTTCTCACTCCGGATTCACAAAACGATGTGAGTCGTTTAATACGGGGATTTCATTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGCTTATACTGGTTGGCTGTTGTGTTTTTGGCATTTGACGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTAATTGGCATTGCCCTCTGTTGTTGTTTGCCTTGCATCATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTCAGTATAATTCCAAAATACAGATTTGAAATTTTAAGCAATGAGGAAAAGCCTACTGGGGGAGCTGGAAGAATGGTTCCCATTGAAACCAGTAGTGGATATGTTGCAAACGAACGGACACTTTTGCCTGAGGATGCGGAATGTTGCATATGCCTTTGTCCTTACGAGGATGGAACAGAGCTCCATGCTCTTCCGTGCAATCATCATTTTCATTCTTTATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAAGGAAATGAACAAGTGTGA 1089 0.5253 MSSQTTAREAAEPQAPLLRSRHGNSDASAASRAPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLACTLDERPNTPIRLWIFGYGLQCLLHVVLVWLEYRRRNQRNSRRQRRTSGIESEDADSFEDANDSDDDDVGDGNSSHSGFTKRCESFNTGISFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSIIPKYRFEILSNEEKPTGGAGRMVPIETSSGYVANERTLLPEDAECCICLCPYEDGTELHALPCNHHFHSLCIVKWLKMNATCPLCKYNILKGNEQV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02398 362 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 362 - -
Aip05g02398 362 MobiDBLite consensus disorder prediction 1 30 - -
Aip05g02398 362 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
Aip05g02398 362 SMART ring_2 311 351 IPR001841 -
Aip05g02398 362 PANTHER TARGET OF ERK KINASE MPK-1 9 362 - -
Aip05g02398 362 SUPERFAMILY RING/U-box 298 356 - -
Aip05g02398 362 Pfam Ring finger domain 310 352 IPR001841 -
Aip05g02398 362 MobiDBLite consensus disorder prediction 136 172 - -
Aip05g02398 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 360 IPR013083 -
Aip05g02398 362 MobiDBLite consensus disorder prediction 148 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02398 Aip-Chr5 115338588 115350887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02398 3 361 C3H Transcription Factor Family AT1G68070 66.017 3.66e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02398 - K13148 aip:107643865 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g02398 05 115338588 115350887 Aip05g02398 05 115338588 115350887 ECH