Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02380 ATGAGTAGCAATGAACAAACTTCTGGTGCTAGTCACAACGCCAGGGCTTTAATATCCAACGCTGCTGCTGGTGCTTCTGCTGGGGCCATAGCAGCTACGTTTGTGTGTCCGTTGGATGTGATCAAAACAAGGTTACAAGTCCATGGTCTTCCTCCTTCACATAAAGGTAGCATTTTTGTTTACTTCACAGTTTATGAGCAACTAAAGGGACTGCTTCGTTCACAGGATGGTAGCAATGAACTCACAACTATTAGAAACATTATAGCTGCTGCTGGTGCTGGGGCAGCAACAGCGATTTCTACAAACCCATTGTGGGTTGTTAAGACAAGGCTCCAAACACAAGGAATGAGGCCGAATGTTGTTCCTTACAAAAGTGTTCTGTCTGCTTTGACAAGGATTACCCGTGAAGAAGGCTTGCGAGGACTATATAGTGGCATTATGCCTTCATTGGCTGGTGTAAGTCATGTTGCAATTCAATTCCCAGCATATGAAAGTATCAAGTCATACATGGCAAAAAAAGATAATACAACTGTTGACAAGCTTAGTCCTGGAAGTGTTGCCATTGCATCATCAATTTCAAAAGTACTTGCCTCCGTAATGACTTATCCGCATGAGGTGATACGATCAAGGCTGCAAGAGCAAGGCCAGGCCAAAAACATGGGGGTCCATTATGAAGGGGTTATAGATTGTACTAAGAAGGTTTTCCATAAAGAAGGCATTCCGGGTTTTTATCGCGGTTGCGCAACCAATCTGTTAAGAACAACTCCATCTGCTGTTATTACCTTCACCAGTTACGAGATGATACATCGGTTCTTGTTGCGGGTTATACCGGAGAACAAGGGTTATCCGCAAAGCTGTCCGAAACCCAAGGCACTTAACAAGCCCCAGGAAGAAGGAATCTCATTCTTCAGAGAAGAGAGAGAGAAGCGAGTAGAGACTCAGATAGAGAGAGGAGAGAAAAAAAGTCTCTCTGTCGCCGACGCTGACGCCCTCCTCCTCGACCTCGTCTCGCTGCGCCGCGCCTCGACTTTCCCCTCGTCCTTGCTTCACCGCGCCTTACCCTTGCCTCGCCTTGCGTTGTCTCACTGCACTTGGACCTTGCCCTCGCCTCTTGTTTCTCGTCGTCGTCGGAGAGGTGGTAGTGGTGGTGGTGGTCGTGTTGCTCGCGTTTCCAGCATCACCGCTACGCCTCCCTTTCTCTTCCCTCCTTGA 1212 0.4777 MSSNEQTSGASHNARALISNAAAGASAGAIAATFVCPLDVIKTRLQVHGLPPSHKGSIFVYFTVYEQLKGLLRSQDGSNELTTIRNIIAAAGAGAATAISTNPLWVVKTRLQTQGMRPNVVPYKSVLSALTRITREEGLRGLYSGIMPSLAGVSHVAIQFPAYESIKSYMAKKDNTTVDKLSPGSVAIASSISKVLASVMTYPHEVIRSRLQEQGQAKNMGVHYEGVIDCTKKVFHKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRVIPENKGYPQSCPKPKALNKPQEEGISFFREEREKRVETQIERGEKKSLSVADADALLLDLVSLRRASTFPSSLLHRALPLPRLALSHCTWTLPSPLVSRRRRRGGSGGGGRVARVSSITATPPFLFPP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02380 403 ProSiteProfiles Solute carrier (Solcar) repeat profile. 181 271 IPR018108 -
Aip05g02380 403 SUPERFAMILY Mitochondrial carrier 18 267 IPR023395 -
Aip05g02380 403 Pfam Mitochondrial carrier protein 181 273 IPR018108 -
Aip05g02380 403 Pfam Mitochondrial carrier protein 18 65 IPR018108 -
Aip05g02380 403 Pfam Mitochondrial carrier protein 80 173 IPR018108 -
Aip05g02380 403 Gene3D Mitochondrial carrier domain 1 58 IPR023395 -
Aip05g02380 403 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 10 52 - -
Aip05g02380 403 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 59 279 - -
Aip05g02380 403 Gene3D Mitochondrial carrier domain 59 275 IPR023395 -
Aip05g02380 403 PRINTS Mitochondrial carrier protein signature 190 212 IPR002067 GO:0055085
Aip05g02380 403 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Aip05g02380 403 PRINTS Mitochondrial carrier protein signature 20 33 IPR002067 GO:0055085
Aip05g02380 403 ProSiteProfiles Solute carrier (Solcar) repeat profile. 81 169 IPR018108 -
Aip05g02380 403 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 10 52 IPR044712 GO:0006862|GO:0055085
Aip05g02380 403 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 59 279 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02380 Aip-Chr5 114640868 114646009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02380 33 277 Chloroplast and Mitochondria Gene Families AT1G25380 63.345 4.87e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02380 K15115 - gmx:100816376 464.151