Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02322 ATGTCCATAAAGGAGGATGATGTTAAGAATAATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGCAGAAGATGATGCTGATGACGACGATGTGGATTCGCTGGATTCCACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGGATTTAATGATGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGAAATATGAGGTATCTTGATATGGATGATAGATCAAGGGAGGCAAGGTCACTAATGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACCGGCCAATCGTCGTCTAACTGTCACTGATAGAGTCCAAGTGGAAAATCTTCAAAATTTTGGTGTCAAGAGCTGCCATATTATGGGGTATATTGCATTCCAGAAGGATGGATATCGTCATGCTGGCTTCACACGGAAAGATTTGTACAACCACATCGATCGCTATCGTCGGGAAAAAGTTAAAAACGGGGATGCCAATGCGGCAATAAACTATTTGATTGGCAAGTCAAACAACGATCCGCTGTTCTTTGGAAAGTATACGTTCACTAGTGACGAAAGGCTGGAGCATATTTTTTGGGCAGATGGGCAGTCAATTATCGACTATCACTGCTTTAGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTCATTTTCTCTGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCTCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTGAAGCGATGGGTGGGAAAAGTCCAAAAGCAGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTGCCTGATGCGACCCATCGGTTATGCGGATGGCATCTGCAGAGAAATGCATGTGAAAATATAAAGAATCCTAATTTCCTGCGTGATTTTAAGGGTCTTATATACGACAACAACGACCAGAGAGACTTTGATCTGAGATGGGCAGCCATTTTGGATAAGCACAACCTTGTTGGCAGTACCTGGATGGAAAAGACGTACGAAACTCGTGAGATGTGGTCCCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGATGACATCACAGTGTGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATAGCTGACTTTAAGTCTCAATGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAATATTTTCAAAGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCCCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAAAAATGCCTGTGAAGGATGACATCGAAAGGTTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACATGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAAATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAAAAAGTTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAGCCTCCATGAAAGCAGTGAATCAATTGACATCGCGTCCACGAATGGTGTTTTCAATAAAAATTTCTACTTGTTAACACAGCAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAACTATGAATGCGTTAATGATGTCATTGATGATAAATGTGACACACGACATGTGCAGATCGATGTCCGAGATCTGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGTATTGTTCGCGTCGATGCATAGGACACTTTGA 2700 0.4322 MSIKEDDVKNNSDNDLGDDFDYQPNAEDDADDDDVDSLDSTSKSEEVCGVKRIADLMMEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDMDDRSREARSLMRTKCPARLRVKLDYGCGRWKVSCFVESHNHDLTPPQFAHLVPANRRLTVTDRVQVENLQNFGVKSCHIMGYIAFQKDGYRHAGFTRKDLYNHIDRYRREKVKNGDANAAINYLIGKSNNDPLFFGKYTFTSDERLEHIFWADGQSIIDYHCFRDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFGSGLLSDETTETYKWLLETFVEAMGGKSPKAVITDGDLAMRDAIKNVLPDATHRLCGWHLQRNACENIKNPNFLRDFKGLIYDNNDQRDFDLRWAAILDKHNLVGSTWMEKTYETREMWSHCFLRDKFFGYIRMTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFTRNIFKEIRNEIQRAGALNITVLSTTLDKVEFSVTAPGDPAKDRRVEVDRGKNLFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTKMPVKDDIERFLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNMEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKRCPNLMQHSVEGNPRDRSYGNASAKDSGFSPKSFANSSRSFSIKSEHHSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVERSLHESSESIDIASTNGVFNKNFYLLTQQVKESQQDKRHSFTNYECVNDVIDDKCDTRHVQIDVRDLLPSSLPCGNKQGSYMVLFASMHRTL 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02322 899 Pfam MULE transposase domain 286 380 IPR018289 -
Aip05g02322 899 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Aip05g02322 899 MobiDBLite consensus disorder prediction 1 42 - -
Aip05g02322 899 MobiDBLite consensus disorder prediction 1 16 - -
Aip05g02322 899 SUPERFAMILY Retrovirus zinc finger-like domains 701 733 IPR036875 GO:0003676|GO:0008270
Aip05g02322 899 MobiDBLite consensus disorder prediction 20 39 - -
Aip05g02322 899 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 720 IPR031052 GO:0006355
Aip05g02322 899 PANTHER OS02G0262500 PROTEIN 60 720 - -
Aip05g02322 899 MobiDBLite consensus disorder prediction 735 796 - -
Aip05g02322 899 ProSiteProfiles Zinc finger CCHC-type profile. 715 730 IPR001878 GO:0003676|GO:0008270
Aip05g02322 899 MobiDBLite consensus disorder prediction 749 775 - -
Aip05g02322 899 ProSiteProfiles Zinc finger SWIM-type profile. 563 599 IPR007527 GO:0008270
Aip05g02322 899 SMART 26again6 574 601 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02322 Aip-Chr5 111877483 111880483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g02322 MULE 4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02322 - - ahf:112755379 1695.25