Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02315 ATGTCTAGTTGTGTGGTTCTACCTTCATGGCTCATAACCTTTTGTGGAGTTGGCCATACTGCGCCTGcctccacaacgcgaagcagcagtccagccaccgccgccgtcccaacttcgagcttcgaaggcaacggcgcaacgtctgtccagccaccaccgtttgagcttcgaaaatcgaatcaactatcgccggtctcgcctcttgcctccgtcgcgcagtcacttcctGCCGGTGGCAACTCTGTTCCACACCACCACGTCGGCCACTATCTTCCCAGCCACTGTCCCCAACCACTTCCATACCCTCGCCAGCTCTGCCCTGTTCCAGCCTTCCAGGATCCAGCTTCTAGCTTAGctgTCATTGGAGCCATTCACACACCACTTTGGCCAAGCTCTCTACTAAAAGGCAAGAAGTTCTTTCTCCAGCAGGCAACATTGTTGAACAGACTATTGTTCAAATCAGAGTGGTGTTGGGCTCATGATTGTGTCCCTCATAGAGAGATTCTATCAGGAACTCACTTCCCTCCATCATCGACCATCACCGCCATAGGCCTTGCCACCGCTGACAGCCGCTGTCCATCGTCCTACACTCATTCAAACCGCATCTCTATTCCTCCACCTCAGATCTGCGTTTTTTGGTGTGAGTCCTGCGACTGCAATACTCTTCCTTCTCTTTCTTTCTCTGCTTACAATGAAGGACTCCGAATCCCATTCGCCTTCTGTCGTTCGCCTCACATCGGGGGCAAGAAATTCTGCACCACAACTGATACGTTGACTCAGCGGGAGCCTCATCCAATGCTGGCTACTATGTTCAGTGGTCGCCATACTCTCTTCCTAGATTCTGATAAGGGATATGTCTTTGTTGACATGGATGGTAAGCACTTCCATCACATTCTTAATTGGTTGAGAGATGGTGTGGTTCCCATTCTGGAGGACTCTGAATATAATGAACTATTGCGGGAGGCTGAGTACTATCAATTGCTTGTTTATGTTCGATGCATTATCATCTATCTCTGTTCGGTGCTGAGTGTTAGTAACACTGAAGGTCAATTGGGATTCACCACTCTTGACACCCTGAAGCGAACAAGGGAGGAATCCAAGAAGCAACGACTGGGGTCAGGGGGTGACTTGCCCCAATCTGGTGGTGAGTACAATCCTTATCGCGCGCTGCGCAGGGTCAATTCCAGCCACGGCATGATGATCGATGACGACAAGGAGGCTGGTTCTTTGGGGCCTTACCACGACAGGCCAAGAACTTTCCCCAACATGCGCACCAAACCTTACACCCCAGTGATATTTCGTATTCTCCTGGGAATAAATGTCCGTGTTCTATTCATTCTTTTGCTCCTCGGATTTGGGGCTATCTTTTACATGGGAGCCAGTACATCTCCCATCATTGTCTTTGTCATCTCTATTTGTATTCTCAGCTTCCTTGTGTCTATATATCTTACAAAGTGGGTGCTTGCAAAGGATGAGGGCCCCCCTGAAATGGTTCAGTGTTATCTCAGCATCTAG 1515 0.4337 MSSCVVLPSWLITFCGVGHTAPASTTRSSSPATAAVPTSSFEGNGATSVQPPPFELRKSNQLSPVSPLASVAQSLPAGGNSVPHHHVGHYLPSHCPQPLPYPRQLCPVPAFQDPASSLAVIGAIHTPLWPSSLLKGKKFFLQQATLLNRLLFKSEWCWAHDCVPHREILSGTHFPPSSTITAIGLATADSRCPSSYTHSNRISIPPPQICVFWCESCDCNTLPSLSFSAYNEGLRIPFAFCRSPHIGGKKFCTTTDTLTQREPHPMLATMFSGRHTLFLDSDKGYVFVDMDGKHFHHILNWLRDGVVPILEDSEYNELLREAEYYQLLVYVRCIIIYLCSVLSVSNTEGQLGFTTLDTLKRTREESKKQRLGSGGDLPQSGGEYNPYRALRRVNSSHGMMIDDDKEAGSLGPYHDRPRTFPNMRTKPYTPVIFRILLGINVRVLFILLLLGFGAIFYMGASTSPIIVFVISICILSFLVSIYLTKWVLAKDEGPPEMVQCYLSI 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02315 504 PANTHER UNCHARACTERIZED 245 334 - -
Aip05g02315 504 SUPERFAMILY POZ domain 246 341 IPR011333 -
Aip05g02315 504 Pfam BTB/POZ domain 246 327 IPR003131 GO:0051260
Aip05g02315 504 MobiDBLite consensus disorder prediction 22 56 - -
Aip05g02315 504 Gene3D Potassium Channel Kv1.1; Chain A 245 338 IPR011333 -
Aip05g02315 504 SMART BTB_4 245 342 IPR000210 GO:0005515
Aip05g02315 504 MobiDBLite consensus disorder prediction 364 385 - -
Aip05g02315 504 PANTHER OS10G0438000 PROTEIN 245 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02315 Aip-Chr5 111797308 111803190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02315 399 499 Primary Pumps ATPases AT1G78920 72.277 1.39e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02315 K23025 - aip:107643818 192.586