Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02309 ATGGGTCGTGGAAGACTATCAATGGAGCTAATTCAGAAAGAAAAAGCTAGGAAGACAACATTTGTAAAGAGAAAGAATGGATTAATGAAGAAAGTGGACGAGTTCTCCACTCTTTGTGGTGTTGATGTTTGTTTAATTATCTATGGCCCCAACTTTGATGGTCAAAGACCCACCAAACCTGAGACATGGCCCCAAGATACCGACCAGGTACGCCGAATCATTCAAAAGTACCATAACACAACAAGTGATAGACCTCCTAGGATCTATGATGTTGAAAAGTATTATAGAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGGAGAAGCCTAAGCCCAAGATCACGTATCCTACTTGGGATACCTCATTTAATGATCTTAGGGAAGACCAACTGATAATGTTTGCTGGCATTTTGGATTCTAAGATTGTGTCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCCAAGGGAAAAGCAATAATGGTAGAATCAAAAGACAATGTTGATGAGAATGTTTTTGCTACTCTTTACTTGGCTTCATCAAACCCTAGTAGCTACCTTAATTTTATGCCAAACAAGTCTCAGCAAGCACAGTTTATTCCTCACCTTCCCATGAAACCCATTATTGATTATACCACCCAATTACCATTCTACCCTTCGCAATTAGGGGGAAGTTCATCACAATCTTCCACTCTTCATTTTGACCAAAATACTATGCAACTTATGGGAAAAAATGGGACTTTGGATTGGGAGCAACCAGTTGGTACTTTTAGCACTCATGATATACAAGTTCATTTTCTAAATTACACTGGAGATGGAAGCAACAACCAGAACTCTTCATCGCCATGCTATTACAAAGGGAATATACAATCTGTGCAGCCATATAGTTTTGCTCTACCTCAATATGAAGATGTGCCTCCTGAGTTTCAAGTTAATGGACTCTATGATACAAATGTGACATTAAGTTCAAATGTTCAACTACATGCATGA 1011 0.3867 MGRGRLSMELIQKEKARKTTFVKRKNGLMKKVDEFSTLCGVDVCLIIYGPNFDGQRPTKPETWPQDTDQVRRIIQKYHNTTSDRPPRIYDVEKYYRDRVKKVEGEISKVHKEKEKPKPKITYPTWDTSFNDLREDQLIMFAGILDSKIVSCNQRINMLKQDPKGKAIMVESKDNVDENVFATLYLASSNPSSYLNFMPNKSQQAQFIPHLPMKPIIDYTTQLPFYPSQLGGSSSQSSTLHFDQNTMQLMGKNGTLDWEQPVGTFSTHDIQVHFLNYTGDGSNNQNSSSPCYYKGNIQSVQPYSFALPQYEDVPPEFQVNGLYDTNVTLSSNVQLHA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02309 336 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Aip05g02309 336 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip05g02309 336 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip05g02309 336 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip05g02309 336 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip05g02309 336 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 218 - -
Aip05g02309 336 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Aip05g02309 336 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Aip05g02309 336 PANTHER MADS BOX PROTEIN 3 218 - -
Aip05g02309 336 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip05g02309 336 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02309 Aip-Chr5 111482333 111483343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02309 1 154 Type I MADS-box Gene Family AT5G55690 38.065 1.48e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip05g02309 SRF-TF 6.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02309 - - aip:107640879 655.21