Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02306 ATGTCGAAGGACAAACACTCTACCAATTATTCGTGCACCTTCAAGTGGCTCTTAGCTACTCAATTCTTGTCAATAGGAATTCCATTTATTTTCAATACATGGATTGTAAGGCATCTTACACAAGAGGACTATGTGGATAAGATGTCTCATAGGAAGTTCGATCACCCAAGACACGGTTCTCTTGGCTTTCTTCCAAGGATGGCAGCTTCTCGTCATCATGGAAAAGTGATTTGGTTTCCTCCTCTTGGTGCACATGGGAGTACTGACCAGGAAGCTTTGAAGAAGATATTGGTAGTTGCACATGACAAGTCTCAAAAGAAGGTTGATAAAGCTATAGAGGACATACAAAAAGATGAAGGCAGGGATACAAAGCGAAGGAAGCTGTGTGAATCAGACATTGAAGCAGTAGAGGAAATTAACTTTTCAGTTTCTAAAGTGAAGAGCAACTACAAGGATGCTACCCTCTTACCAAAATGGAAAGCATTTCAAATAGTCATATATCTTGAACGGGATGATAGCCTGAATGACTTAAGTAAAATTGCTGCATTTGATTTTGATGGGTGTCTTGCAAAAACTGCTGTGAATAAAGTGGGTGCAGACGTTTGGTCCCTCATGTATCCTTCAATTCCTGATAAACTACAAAGCTTATACAAGGATGGGTACAAGCTGGTAATTTTCACCAATGAATTCAATATTGAACGTTGGAAAAATAAGAGACAAGTAGCCGTGGACTAA 735 0.3946 MSKDKHSTNYSCTFKWLLATQFLSIGIPFIFNTWIVRHLTQEDYVDKMSHRKFDHPRHGSLGFLPRMAASRHHGKVIWFPPLGAHGSTDQEALKKILVVAHDKSQKKVDKAIEDIQKDEGRDTKRRKLCESDIEAVEEINFSVSKVKSNYKDATLLPKWKAFQIVIYLERDDSLNDLSKIAAFDFDGCLAKTAVNKVGADVWSLMYPSIPDKLQSLYKDGYKLVIFTNEFNIERWKNKRQVAVD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02306 244 Pfam Polynucleotide kinase 3 phosphatase 179 240 IPR013954 -
Aip05g02306 244 Pfam Ribosomal protein L3 48 81 IPR000597 GO:0003735|GO:0005840|GO:0006412
Aip05g02306 244 Gene3D Ribosomal protein L3, domain 3 48 146 IPR044892 -
Aip05g02306 244 Gene3D - 157 243 IPR023214 -
Aip05g02306 244 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 179 237 IPR006549 -
Aip05g02306 244 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 93 244 - -
Aip05g02306 244 SUPERFAMILY HAD-like 179 236 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02306 Aip-Chr5 111323851 111328410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02306 48 80 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 81.818 3.53e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02306 K08073 - adu:107461119 224.172