Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g02301 ATGCGAGTCGGATCAAACTCTACAGTCGGCCGTCATTGTACCAATACCACCGATGATGCAAGACATCAAGATAGCGGGGCCAGCACAATCGTGGATCCGGACGTCGGTGGCGGCGTCACCGAAGTGGAGTCACGAAAACTCCCTTCGTCCAAGTATAAAGGTGTGGTTCCCCAACCAAACGGACGTTGGGGTGCTCAGATTTATGAGAAGCATCAACGCGTTTGGTTGGGGACCTTTAACGAGGAGGACGAGGCCGCTAGAGCCTACGACATCGCAGCTCAACGGTTTCGTGGCAAGGATGCCGTCACCAACTTCAAGCCCCTCGGCAGTGTTGTGTCCAACAACACCGCGGTCGAGGACGAGGATTTCGAGAGCGAGTTTCTCAACTCACATTCAAAATCCGAGATCGTGGACATGCTGAGAAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGGAGCCGCGGCCTCATAGGGCGGCGACTCAACCGAGCTGCGGGTAACGGAGGTTCCGCGGGGATGATGTCTTCATCCGGCGCGTGTGGAGGGAAGGCGCGTGAGCAGTTGTTCGAGAAGGCCGTTACGCCAAGTGACGTGGGAAAACTGAATCGGTTAGTTATACCAAAACAACACGCGGAGAAACACTTTCCCTTACAAAACGGTTGCGGCGGAGCTGGCGGCGGAGTAGTTACGGCGGCGAAGGGCGTTTTGCTGAACTTCGAGGACGTCGGAGGAAAAGTGTGGCGGTTTCGTTACTCGTACTGGAACAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGATACGGTTTGTTTCCACCGGTCCACTGGACCGGACAGACAACTGTTTATAGACTGGAAGGCGAGAAGTGTTGGTAATGATGGGGTTGGGTTTTTTGGACCGGTTGGACCGGTTTTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGTGTTAACATTTTAAAGCTTCCTGGATCTGATGCCGGTGATAGCAATAACAATAATATTTTGAATATCAATAATGATAATAATGTTGCTGGTTCAATTGGTGGGTGCTTCAATGGGAAGAGAAAAGAGATGGAACTGTTTACGTTGGAGGGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1170 0.5205 MRVGSNSTVGRHCTNTTDDARHQDSGASTIVDPDVGGGVTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGSVVSNNTAVEDEDFESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLIGRRLNRAAGNGGSAGMMSSSGACGGKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGCGGAGGGVVTAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDWKARSVGNDGVGFFGPVGPVLEPVQMVRLFGVNILKLPGSDAGDSNNNNILNINNDNNVAGSIGGCFNGKRKEMELFTLEGSKKPKIIGAL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g02301 389 Pfam B3 DNA binding domain 191 300 IPR003340 GO:0003677
Aip05g02301 389 ProSiteProfiles B3 DNA-binding domain profile. 191 302 IPR003340 GO:0003677
Aip05g02301 389 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Aip05g02301 389 SMART B3_2 191 303 IPR003340 GO:0003677
Aip05g02301 389 MobiDBLite consensus disorder prediction 1 24 - -
Aip05g02301 389 SMART rav1_2 51 112 IPR001471 GO:0003700|GO:0006355
Aip05g02301 389 ProSiteProfiles AP2/ERF domain profile. 51 106 IPR001471 GO:0003700|GO:0006355
Aip05g02301 389 CDD B3_DNA 190 288 IPR003340 GO:0003677
Aip05g02301 389 SUPERFAMILY DNA-binding domain 50 106 IPR016177 GO:0003677
Aip05g02301 389 MobiDBLite consensus disorder prediction 1 53 - -
Aip05g02301 389 Gene3D AP2/ERF domain 50 107 IPR036955 GO:0003700|GO:0006355
Aip05g02301 389 SUPERFAMILY DNA-binding pseudobarrel domain 189 299 IPR015300 -
Aip05g02301 389 CDD AP2 50 105 IPR001471 GO:0003700|GO:0006355
Aip05g02301 389 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 24 389 - -
Aip05g02301 389 Gene3D - 179 308 IPR015300 -
Aip05g02301 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 24 389 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g02301 Aip-Chr5 111200287 111206941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g02301 26 389 B3 DNA Binding Superfamily AT1G25560 57.838 2.28e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Aip05g02301 B3 1e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g02301 K09287 - gmx:100801107 529.635